Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3492 and Dsui_3493 are separated by 278 nucleotides Dsui_3493 and Dsui_3494 are separated by 1 nucleotides
Dsui_3492: Dsui_3492 - Tfp pilus assembly protein, tip-associated adhesin PilY1, at 3,755,518 to 3,759,021
_3492
Dsui_3493: Dsui_3493 - Gram-negative bacterial tonB protein, at 3,759,300 to 3,759,743
_3493
Dsui_3494: Dsui_3494 - (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase, at 3,759,745 to 3,760,674
_3494
Position (kb)
3759
3760 Strain fitness (log2 ratio)
-2
-1
0
1 at 3758.353 kb on - strand, within Dsui_3492 at 3758.422 kb on + strand, within Dsui_3492 at 3758.500 kb on - strand, within Dsui_3492 at 3758.512 kb on + strand, within Dsui_3492 at 3758.520 kb on - strand, within Dsui_3492 at 3758.578 kb on - strand, within Dsui_3492 at 3758.590 kb on - strand, within Dsui_3492 at 3758.590 kb on - strand, within Dsui_3492 at 3758.609 kb on + strand, within Dsui_3492 at 3758.624 kb on - strand, within Dsui_3492 at 3758.707 kb on - strand at 3758.762 kb on + strand at 3758.802 kb on - strand at 3758.888 kb on - strand at 3758.899 kb on + strand at 3759.085 kb on - strand at 3759.097 kb on + strand at 3759.128 kb on - strand at 3759.251 kb on - strand at 3759.263 kb on + strand at 3759.271 kb on - strand at 3759.271 kb on - strand at 3759.374 kb on - strand, within Dsui_3493 at 3759.445 kb on - strand, within Dsui_3493 at 3759.547 kb on + strand, within Dsui_3493 at 3759.547 kb on - strand, within Dsui_3493 at 3759.552 kb on - strand, within Dsui_3493 at 3759.565 kb on - strand, within Dsui_3493 at 3759.634 kb on - strand, within Dsui_3493 at 3759.675 kb on + strand, within Dsui_3493 at 3759.675 kb on + strand, within Dsui_3493
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 3,758,353 - Dsui_3492 0.81 -1.5 3,758,422 + Dsui_3492 0.83 -0.2 3,758,500 - Dsui_3492 0.85 -0.5 3,758,512 + Dsui_3492 0.85 -0.0 3,758,520 - Dsui_3492 0.86 +0.5 3,758,578 - Dsui_3492 0.87 +0.5 3,758,590 - Dsui_3492 0.88 -1.1 3,758,590 - Dsui_3492 0.88 -0.1 3,758,609 + Dsui_3492 0.88 -0.0 3,758,624 - Dsui_3492 0.89 -2.3 3,758,707 - -0.5 3,758,762 + -1.1 3,758,802 - -1.1 3,758,888 - -0.5 3,758,899 + -0.2 3,759,085 - -2.2 3,759,097 + -1.1 3,759,128 - -0.1 3,759,251 - +0.1 3,759,263 + -0.6 3,759,271 - -0.3 3,759,271 - -1.0 3,759,374 - Dsui_3493 0.17 +0.0 3,759,445 - Dsui_3493 0.33 -0.2 3,759,547 + Dsui_3493 0.56 +1.4 3,759,547 - Dsui_3493 0.56 +0.0 3,759,552 - Dsui_3493 0.57 -0.1 3,759,565 - Dsui_3493 0.60 +0.0 3,759,634 - Dsui_3493 0.75 -0.3 3,759,675 + Dsui_3493 0.84 -2.3 3,759,675 + Dsui_3493 0.84 -0.2
Or see this region's nucleotide sequence