Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3469 and Dsui_3470 are separated by 195 nucleotides Dsui_3470 and Dsui_3471 overlap by 4 nucleotides Dsui_3471 and Dsui_3472 are separated by 10 nucleotides Dsui_3472 and Dsui_3473 are separated by 10 nucleotides Dsui_3473 and Dsui_3474 overlap by 4 nucleotides
Dsui_3469: Dsui_3469 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 3,732,786 to 3,733,415
_3469
Dsui_3470: Dsui_3470 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 3,733,611 to 3,734,009
_3470
Dsui_3471: Dsui_3471 - methyl-accepting chemotaxis protein, at 3,734,006 to 3,735,151
_3471
Dsui_3472: Dsui_3472 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,735,162 to 3,735,530
_3472
Dsui_3473: Dsui_3473 - putative NTP binding protein (contains STAS domain), at 3,735,541 to 3,735,855
_3473
Dsui_3474: Dsui_3474 - chemotaxis protein histidine kinase-like protein, at 3,735,852 to 3,738,071
_3474
Position (kb)
3734
3735
3736 Strain fitness (log2 ratio)
-1
0
1 at 3733.063 kb on - strand, within Dsui_3469 at 3733.324 kb on - strand, within Dsui_3469 at 3733.386 kb on + strand at 3733.394 kb on - strand at 3733.542 kb on - strand at 3734.045 kb on - strand at 3734.045 kb on - strand at 3734.072 kb on - strand at 3734.137 kb on + strand at 3734.209 kb on + strand at 3734.279 kb on - strand at 3734.430 kb on + strand at 3734.430 kb on + strand, within Dsui_3471 at 3734.703 kb on - strand at 3734.724 kb on + strand, within Dsui_3471 at 3734.793 kb on + strand at 3734.807 kb on - strand at 3734.840 kb on + strand, within Dsui_3471 at 3735.265 kb on + strand at 3735.274 kb on + strand at 3735.341 kb on - strand at 3735.497 kb on - strand at 3735.532 kb on - strand at 3735.532 kb on - strand at 3735.546 kb on + strand at 3735.578 kb on + strand, within Dsui_3473 at 3735.676 kb on - strand, within Dsui_3473 at 3735.774 kb on - strand at 3735.836 kb on + strand at 3735.900 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 3,733,063 - Dsui_3469 0.44 +0.5 3,733,324 - Dsui_3469 0.85 -0.5 3,733,386 + +0.5 3,733,394 - +0.5 3,733,542 - +0.5 3,734,045 - +0.5 3,734,045 - -1.5 3,734,072 - -0.5 3,734,137 + -0.5 3,734,209 + -0.5 3,734,279 - -0.5 3,734,430 + -0.5 3,734,430 + Dsui_3471 0.37 -0.5 3,734,703 - +0.5 3,734,724 + Dsui_3471 0.63 -0.5 3,734,793 + -0.5 3,734,807 - +0.5 3,734,840 + Dsui_3471 0.73 +0.5 3,735,265 + -0.5 3,735,274 + +0.5 3,735,341 - -0.5 3,735,497 - -0.5 3,735,532 - +0.5 3,735,532 - -1.1 3,735,546 + +0.5 3,735,578 + Dsui_3473 0.12 -0.5 3,735,676 - Dsui_3473 0.43 -1.5 3,735,774 - -0.5 3,735,836 + -1.1 3,735,900 - -1.5
Or see this region's nucleotide sequence