Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3430 and Dsui_3431 overlap by 4 nucleotides Dsui_3431 and Dsui_3432 overlap by 1 nucleotides Dsui_3432 and Dsui_3433 are separated by 124 nucleotides Dsui_3433 and Dsui_3434 are separated by 82 nucleotides
Dsui_3430: Dsui_3430 - heavy metal efflux pump, cobalt-zinc-cadmium, at 3,681,043 to 3,684,129
_3430
Dsui_3431: Dsui_3431 - Protein of unknown function (DUF3240), at 3,684,126 to 3,684,446
_3431
Dsui_3432: Dsui_3432 - outer membrane protein, at 3,684,446 to 3,685,723
_3432
Dsui_3433: Dsui_3433 - putative acetyltransferase, at 3,685,848 to 3,686,354
_3433
Dsui_3434: Dsui_3434 - hypothetical protein, at 3,686,437 to 3,686,694
_3434
Position (kb)
3684
3685
3686 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3683.504 kb on + strand, within Dsui_3430 at 3683.538 kb on + strand, within Dsui_3430 at 3683.546 kb on - strand, within Dsui_3430 at 3683.653 kb on - strand at 3683.716 kb on - strand, within Dsui_3430 at 3683.796 kb on + strand, within Dsui_3430 at 3683.979 kb on - strand at 3684.047 kb on + strand at 3684.047 kb on + strand at 3684.055 kb on + strand at 3684.110 kb on - strand at 3684.130 kb on + strand at 3684.130 kb on - strand at 3684.131 kb on - strand at 3684.210 kb on - strand, within Dsui_3431 at 3684.226 kb on - strand, within Dsui_3431 at 3684.354 kb on + strand, within Dsui_3431 at 3684.363 kb on + strand, within Dsui_3431 at 3684.407 kb on + strand, within Dsui_3431 at 3684.420 kb on - strand at 3684.521 kb on + strand at 3684.589 kb on + strand, within Dsui_3432 at 3684.597 kb on - strand, within Dsui_3432 at 3684.648 kb on - strand at 3684.702 kb on - strand, within Dsui_3432 at 3684.955 kb on + strand, within Dsui_3432 at 3685.030 kb on + strand, within Dsui_3432 at 3685.038 kb on - strand at 3685.049 kb on - strand at 3685.194 kb on + strand, within Dsui_3432 at 3685.212 kb on - strand at 3685.246 kb on + strand, within Dsui_3432 at 3685.251 kb on + strand, within Dsui_3432 at 3685.275 kb on + strand, within Dsui_3432 at 3685.283 kb on - strand at 3685.283 kb on - strand, within Dsui_3432 at 3685.396 kb on - strand, within Dsui_3432 at 3685.435 kb on + strand, within Dsui_3432 at 3685.680 kb on + strand at 3685.688 kb on - strand at 3685.763 kb on + strand at 3686.050 kb on - strand, within Dsui_3433 at 3686.124 kb on - strand, within Dsui_3433 at 3686.217 kb on - strand at 3686.226 kb on + strand at 3686.288 kb on - strand at 3686.294 kb on - strand at 3686.389 kb on - strand at 3686.404 kb on - strand at 3686.467 kb on + strand, within Dsui_3434 at 3686.528 kb on + strand, within Dsui_3434 at 3686.678 kb on + strand at 3686.698 kb on + strand at 3686.723 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 3,683,504 + Dsui_3430 0.80 -3.1 3,683,538 + Dsui_3430 0.81 -2.5 3,683,546 - Dsui_3430 0.81 -1.8 3,683,653 - +0.5 3,683,716 - Dsui_3430 0.87 -1.1 3,683,796 + Dsui_3430 0.89 -2.3 3,683,979 - +0.5 3,684,047 + -3.1 3,684,047 + -4.1 3,684,055 + -3.2 3,684,110 - +0.5 3,684,130 + -0.1 3,684,130 - +0.5 3,684,131 - +0.5 3,684,210 - Dsui_3431 0.26 -0.5 3,684,226 - Dsui_3431 0.31 -2.1 3,684,354 + Dsui_3431 0.71 -1.1 3,684,363 + Dsui_3431 0.74 +0.5 3,684,407 + Dsui_3431 0.88 -0.5 3,684,420 - +0.5 3,684,521 + -2.8 3,684,589 + Dsui_3432 0.11 -1.0 3,684,597 - Dsui_3432 0.12 +0.5 3,684,648 - -0.5 3,684,702 - Dsui_3432 0.20 -2.3 3,684,955 + Dsui_3432 0.40 -2.6 3,685,030 + Dsui_3432 0.46 -3.4 3,685,038 - +0.5 3,685,049 - -0.5 3,685,194 + Dsui_3432 0.59 -2.8 3,685,212 - +0.5 3,685,246 + Dsui_3432 0.63 -2.6 3,685,251 + Dsui_3432 0.63 -2.3 3,685,275 + Dsui_3432 0.65 -2.8 3,685,283 - +0.5 3,685,283 - Dsui_3432 0.65 +0.5 3,685,396 - Dsui_3432 0.74 -1.8 3,685,435 + Dsui_3432 0.77 -2.0 3,685,680 + -1.3 3,685,688 - -1.5 3,685,763 + -0.5 3,686,050 - Dsui_3433 0.40 -1.1 3,686,124 - Dsui_3433 0.54 -0.5 3,686,217 - -0.5 3,686,226 + +0.5 3,686,288 - +2.1 3,686,294 - +0.5 3,686,389 - -0.5 3,686,404 - +0.5 3,686,467 + Dsui_3434 0.12 +0.5 3,686,528 + Dsui_3434 0.35 -2.3 3,686,678 + -0.5 3,686,698 + +0.5 3,686,723 + -1.8
Or see this region's nucleotide sequence