Strain Fitness in Dechlorosoma suillum PS around Dsui_3429

Experiment: ALP with Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3428 and Dsui_3429 are separated by 219 nucleotidesDsui_3429 and Dsui_3430 overlap by 1 nucleotides Dsui_3428: Dsui_3428 - transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 3,678,707 to 3,679,666 _3428 Dsui_3429: Dsui_3429 - RND family efflux transporter, MFP subunit, at 3,679,886 to 3,681,043 _3429 Dsui_3430: Dsui_3430 - heavy metal efflux pump, cobalt-zinc-cadmium, at 3,681,043 to 3,684,129 _3430 Position (kb) 3679 3680 3681 3682Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3678.936 kb on - strand, within Dsui_3428at 3678.963 kb on - strandat 3678.972 kb on + strand, within Dsui_3428at 3679.111 kb on + strandat 3679.197 kb on + strand, within Dsui_3428at 3679.295 kb on + strandat 3679.295 kb on + strand, within Dsui_3428at 3679.303 kb on - strandat 3679.409 kb on + strand, within Dsui_3428at 3679.423 kb on - strandat 3679.441 kb on - strandat 3679.608 kb on + strandat 3679.609 kb on + strandat 3679.661 kb on + strandat 3679.730 kb on + strandat 3679.787 kb on - strandat 3679.832 kb on - strandat 3679.857 kb on - strandat 3679.870 kb on + strandat 3679.878 kb on - strandat 3679.944 kb on - strandat 3679.956 kb on - strandat 3680.005 kb on + strand, within Dsui_3429at 3680.005 kb on + strand, within Dsui_3429at 3680.143 kb on + strand, within Dsui_3429at 3680.347 kb on + strand, within Dsui_3429at 3680.592 kb on - strand, within Dsui_3429at 3680.603 kb on - strand, within Dsui_3429at 3680.804 kb on + strand, within Dsui_3429at 3680.804 kb on + strand, within Dsui_3429at 3680.919 kb on + strand, within Dsui_3429at 3681.062 kb on + strandat 3681.070 kb on - strandat 3681.147 kb on - strandat 3681.269 kb on + strandat 3681.269 kb on + strandat 3681.277 kb on - strandat 3681.348 kb on + strandat 3681.502 kb on + strand, within Dsui_3430at 3681.502 kb on + strand, within Dsui_3430at 3681.663 kb on - strand, within Dsui_3430at 3681.726 kb on + strand, within Dsui_3430at 3681.809 kb on + strand, within Dsui_3430at 3681.860 kb on - strandat 3681.933 kb on + strand, within Dsui_3430at 3681.933 kb on + strand, within Dsui_3430at 3681.941 kb on - strandat 3681.977 kb on - strandat 3681.986 kb on - strand, within Dsui_3430

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM
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3,678,936 - Dsui_3428 0.24 -1.1
3,678,963 - +0.5
3,678,972 + Dsui_3428 0.28 -0.4
3,679,111 + -1.1
3,679,197 + Dsui_3428 0.51 -0.9
3,679,295 + +0.5
3,679,295 + Dsui_3428 0.61 -0.8
3,679,303 - -1.1
3,679,409 + Dsui_3428 0.73 -2.6
3,679,423 - +0.5
3,679,441 - +0.5
3,679,608 + -0.2
3,679,609 + -0.1
3,679,661 + +0.5
3,679,730 + -0.5
3,679,787 - -0.5
3,679,832 - -1.1
3,679,857 - -1.5
3,679,870 + -4.2
3,679,878 - -1.5
3,679,944 - +0.5
3,679,956 - -0.5
3,680,005 + Dsui_3429 0.10 -2.9
3,680,005 + Dsui_3429 0.10 -2.5
3,680,143 + Dsui_3429 0.22 -2.6
3,680,347 + Dsui_3429 0.40 -2.9
3,680,592 - Dsui_3429 0.61 -0.5
3,680,603 - Dsui_3429 0.62 -1.5
3,680,804 + Dsui_3429 0.79 -3.4
3,680,804 + Dsui_3429 0.79 -3.7
3,680,919 + Dsui_3429 0.89 -3.6
3,681,062 + -1.1
3,681,070 - -0.5
3,681,147 - -0.5
3,681,269 + -3.3
3,681,269 + -4.2
3,681,277 - +0.5
3,681,348 + -2.7
3,681,502 + Dsui_3430 0.15 -4.4
3,681,502 + Dsui_3430 0.15 -3.9
3,681,663 - Dsui_3430 0.20 +0.5
3,681,726 + Dsui_3430 0.22 -3.9
3,681,809 + Dsui_3430 0.25 -3.0
3,681,860 - +0.5
3,681,933 + Dsui_3430 0.29 -2.8
3,681,933 + Dsui_3430 0.29 -4.5
3,681,941 - +0.5
3,681,977 - +0.5
3,681,986 - Dsui_3430 0.31 -1.1

Or see this region's nucleotide sequence