Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3422 and Dsui_3423 are separated by 287 nucleotides Dsui_3423 and Dsui_3424 are separated by 85 nucleotides Dsui_3424 and Dsui_3425 are separated by 82 nucleotides
Dsui_3422: Dsui_3422 - hemerythrin-like metal-binding domain-containing protein, at 3,674,130 to 3,674,606
_3422
Dsui_3423: Dsui_3423 - hydroxypyruvate isomerase, at 3,674,894 to 3,675,688
_3423
Dsui_3424: Dsui_3424 - ATP:cob(I)alamin adenosyltransferase, at 3,675,774 to 3,676,352
_3424
Dsui_3425: Dsui_3425 - putative translation initiation inhibitor, yjgF family, at 3,676,435 to 3,676,833
_3425
Position (kb)
3674
3675
3676 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3673.926 kb on - strand at 3673.990 kb on - strand at 3674.025 kb on + strand at 3674.056 kb on + strand at 3674.108 kb on + strand at 3674.127 kb on + strand at 3674.127 kb on + strand at 3674.142 kb on + strand at 3674.215 kb on + strand, within Dsui_3422 at 3674.216 kb on + strand, within Dsui_3422 at 3674.228 kb on + strand, within Dsui_3422 at 3674.247 kb on + strand, within Dsui_3422 at 3674.282 kb on + strand, within Dsui_3422 at 3674.301 kb on - strand, within Dsui_3422 at 3674.334 kb on - strand, within Dsui_3422 at 3674.405 kb on - strand, within Dsui_3422 at 3674.421 kb on + strand, within Dsui_3422 at 3674.443 kb on + strand, within Dsui_3422 at 3674.451 kb on - strand at 3674.461 kb on + strand, within Dsui_3422 at 3674.471 kb on - strand, within Dsui_3422 at 3674.637 kb on - strand at 3674.714 kb on + strand at 3674.863 kb on + strand at 3674.889 kb on - strand at 3674.929 kb on - strand at 3674.929 kb on - strand at 3675.112 kb on + strand at 3675.196 kb on - strand, within Dsui_3423 at 3675.480 kb on - strand, within Dsui_3423 at 3675.563 kb on - strand, within Dsui_3423 at 3675.579 kb on - strand, within Dsui_3423 at 3675.670 kb on - strand at 3675.723 kb on + strand at 3675.742 kb on + strand at 3675.760 kb on - strand at 3675.765 kb on - strand at 3675.818 kb on + strand at 3675.852 kb on + strand, within Dsui_3424 at 3675.912 kb on + strand, within Dsui_3424 at 3676.039 kb on + strand, within Dsui_3424 at 3676.042 kb on - strand at 3676.259 kb on + strand, within Dsui_3424 at 3676.313 kb on + strand at 3676.489 kb on - strand at 3676.497 kb on + strand, within Dsui_3425 at 3676.538 kb on - strand, within Dsui_3425 at 3676.561 kb on + strand at 3676.621 kb on + strand, within Dsui_3425 at 3676.646 kb on + strand at 3676.654 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 3,673,926 - -0.5 3,673,990 - +0.5 3,674,025 + +0.0 3,674,056 + -1.5 3,674,108 + -1.5 3,674,127 + -1.2 3,674,127 + -1.0 3,674,142 + -1.8 3,674,215 + Dsui_3422 0.18 +1.1 3,674,216 + Dsui_3422 0.18 -0.4 3,674,228 + Dsui_3422 0.21 -0.7 3,674,247 + Dsui_3422 0.25 -0.1 3,674,282 + Dsui_3422 0.32 +0.5 3,674,301 - Dsui_3422 0.36 -0.1 3,674,334 - Dsui_3422 0.43 -1.5 3,674,405 - Dsui_3422 0.58 -0.5 3,674,421 + Dsui_3422 0.61 -0.7 3,674,443 + Dsui_3422 0.66 +0.5 3,674,451 - -0.5 3,674,461 + Dsui_3422 0.69 +0.3 3,674,471 - Dsui_3422 0.71 +0.5 3,674,637 - +0.5 3,674,714 + +0.5 3,674,863 + -0.5 3,674,889 - -1.4 3,674,929 - -1.5 3,674,929 - -0.5 3,675,112 + +0.5 3,675,196 - Dsui_3423 0.38 -0.5 3,675,480 - Dsui_3423 0.74 -3.9 3,675,563 - Dsui_3423 0.84 -0.5 3,675,579 - Dsui_3423 0.86 +0.5 3,675,670 - +0.5 3,675,723 + -2.1 3,675,742 + -0.3 3,675,760 - -0.5 3,675,765 - -1.1 3,675,818 + -1.2 3,675,852 + Dsui_3424 0.13 +0.1 3,675,912 + Dsui_3424 0.24 +0.0 3,676,039 + Dsui_3424 0.46 -0.5 3,676,042 - +0.5 3,676,259 + Dsui_3424 0.84 -0.4 3,676,313 + -0.6 3,676,489 - -0.5 3,676,497 + Dsui_3425 0.16 +0.5 3,676,538 - Dsui_3425 0.26 -1.5 3,676,561 + -0.5 3,676,621 + Dsui_3425 0.47 -0.5 3,676,646 + -0.5 3,676,654 - -0.5
Or see this region's nucleotide sequence