Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3385 and Dsui_3386 are separated by 196 nucleotides Dsui_3386 and Dsui_3387 overlap by 4 nucleotides Dsui_3387 and Dsui_3388 are separated by 222 nucleotides
Dsui_3385: Dsui_3385 - Protein of unknown function (DUF1504), at 3,628,279 to 3,629,547
_3385
Dsui_3386: Dsui_3386 - response regulator, at 3,629,744 to 3,630,403
_3386
Dsui_3387: Dsui_3387 - histidine kinase,histidine kinase,MASE1-containing protein, at 3,630,400 to 3,632,037
_3387
Dsui_3388: Dsui_3388 - hypothetical protein, at 3,632,260 to 3,633,627
_3388
Position (kb)
3630
3631
3632
3633 Strain fitness (log2 ratio)
-2
-1
0
1 at 3629.553 kb on - strand at 3632.073 kb on - strand at 3632.164 kb on + strand at 3632.164 kb on + strand at 3632.169 kb on + strand at 3632.177 kb on - strand at 3632.266 kb on - strand at 3632.432 kb on + strand, within Dsui_3388 at 3632.482 kb on + strand, within Dsui_3388 at 3632.518 kb on + strand, within Dsui_3388 at 3632.521 kb on - strand, within Dsui_3388 at 3632.521 kb on - strand, within Dsui_3388 at 3632.545 kb on - strand, within Dsui_3388 at 3632.586 kb on - strand, within Dsui_3388 at 3632.612 kb on - strand, within Dsui_3388 at 3632.686 kb on + strand, within Dsui_3388 at 3632.726 kb on + strand, within Dsui_3388 at 3632.817 kb on + strand, within Dsui_3388 at 3632.845 kb on + strand, within Dsui_3388 at 3632.853 kb on - strand, within Dsui_3388 at 3632.927 kb on + strand, within Dsui_3388 at 3632.937 kb on + strand, within Dsui_3388 at 3633.010 kb on - strand, within Dsui_3388
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 3,629,553 - +0.1 3,632,073 - -1.5 3,632,164 + +0.5 3,632,164 + -0.5 3,632,169 + -1.1 3,632,177 - -1.8 3,632,266 - +0.5 3,632,432 + Dsui_3388 0.13 -0.5 3,632,482 + Dsui_3388 0.16 -1.5 3,632,518 + Dsui_3388 0.19 -1.1 3,632,521 - Dsui_3388 0.19 -1.1 3,632,521 - Dsui_3388 0.19 -1.5 3,632,545 - Dsui_3388 0.21 -0.9 3,632,586 - Dsui_3388 0.24 +0.9 3,632,612 - Dsui_3388 0.26 -1.1 3,632,686 + Dsui_3388 0.31 +0.5 3,632,726 + Dsui_3388 0.34 -0.5 3,632,817 + Dsui_3388 0.41 -1.5 3,632,845 + Dsui_3388 0.43 -1.8 3,632,853 - Dsui_3388 0.43 -1.5 3,632,927 + Dsui_3388 0.49 +0.5 3,632,937 + Dsui_3388 0.49 -1.1 3,633,010 - Dsui_3388 0.55 -1.1
Or see this region's nucleotide sequence