Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3251 and Dsui_3252 are separated by 48 nucleotides Dsui_3252 and Dsui_3253 are separated by 290 nucleotides Dsui_3253 and Dsui_3254 are separated by 146 nucleotides Dsui_3254 and Dsui_3255 are separated by 171 nucleotides
Dsui_3251: Dsui_3251 - ATPase involved in chromosome partitioning, at 3,492,166 to 3,492,930
_3251
Dsui_3252: Dsui_3252 - hypothetical protein, at 3,492,979 to 3,493,197
_3252
Dsui_3253: Dsui_3253 - Protein of unknown function (DUF3579), at 3,493,488 to 3,493,781
_3253
Dsui_3254: Dsui_3254 - ribosomal protein S20, at 3,493,928 to 3,494,194
_3254
Dsui_3255: Dsui_3255 - integral membrane protein MviN, at 3,494,366 to 3,495,910
_3255
Position (kb)
3493
3494 Strain fitness (log2 ratio)
-2
-1
0
1 at 3492.706 kb on + strand, within Dsui_3251 at 3492.759 kb on + strand at 3492.833 kb on + strand, within Dsui_3251 at 3492.833 kb on + strand, within Dsui_3251 at 3492.841 kb on - strand, within Dsui_3251 at 3492.841 kb on - strand, within Dsui_3251 at 3492.847 kb on - strand, within Dsui_3251 at 3492.883 kb on - strand at 3492.887 kb on + strand at 3492.890 kb on - strand at 3492.890 kb on - strand at 3492.895 kb on - strand at 3492.958 kb on + strand at 3493.005 kb on + strand, within Dsui_3252 at 3493.005 kb on + strand, within Dsui_3252 at 3493.013 kb on - strand, within Dsui_3252 at 3493.024 kb on - strand, within Dsui_3252 at 3493.050 kb on + strand, within Dsui_3252 at 3493.086 kb on + strand, within Dsui_3252 at 3493.103 kb on - strand, within Dsui_3252 at 3493.105 kb on - strand, within Dsui_3252 at 3493.105 kb on - strand, within Dsui_3252 at 3493.105 kb on - strand, within Dsui_3252 at 3493.123 kb on + strand, within Dsui_3252 at 3493.145 kb on - strand, within Dsui_3252 at 3493.252 kb on - strand at 3493.262 kb on - strand at 3493.267 kb on + strand at 3493.381 kb on + strand at 3493.433 kb on - strand at 3493.440 kb on + strand at 3493.443 kb on - strand at 3493.492 kb on - strand at 3493.596 kb on - strand, within Dsui_3253 at 3493.637 kb on + strand, within Dsui_3253 at 3493.691 kb on + strand, within Dsui_3253 at 3493.691 kb on + strand, within Dsui_3253 at 3493.712 kb on - strand, within Dsui_3253 at 3493.799 kb on + strand at 3493.838 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 3,492,706 + Dsui_3251 0.71 +0.5 3,492,759 + +0.5 3,492,833 + Dsui_3251 0.87 -1.5 3,492,833 + Dsui_3251 0.87 -0.5 3,492,841 - Dsui_3251 0.88 -1.1 3,492,841 - Dsui_3251 0.88 -0.5 3,492,847 - Dsui_3251 0.89 +0.5 3,492,883 - -1.2 3,492,887 + -1.8 3,492,890 - -2.6 3,492,890 - +0.5 3,492,895 - -0.5 3,492,958 + -2.1 3,493,005 + Dsui_3252 0.12 -1.1 3,493,005 + Dsui_3252 0.12 -2.3 3,493,013 - Dsui_3252 0.16 -0.0 3,493,024 - Dsui_3252 0.21 -0.1 3,493,050 + Dsui_3252 0.32 +0.5 3,493,086 + Dsui_3252 0.49 -0.5 3,493,103 - Dsui_3252 0.57 +0.1 3,493,105 - Dsui_3252 0.58 -0.2 3,493,105 - Dsui_3252 0.58 -0.4 3,493,105 - Dsui_3252 0.58 +0.1 3,493,123 + Dsui_3252 0.66 -0.5 3,493,145 - Dsui_3252 0.76 -0.3 3,493,252 - -1.8 3,493,262 - +0.5 3,493,267 + +0.5 3,493,381 + +0.1 3,493,433 - +0.5 3,493,440 + -0.1 3,493,443 - +0.5 3,493,492 - -2.1 3,493,596 - Dsui_3253 0.37 -1.1 3,493,637 + Dsui_3253 0.51 -0.0 3,493,691 + Dsui_3253 0.69 +0.2 3,493,691 + Dsui_3253 0.69 +0.5 3,493,712 - Dsui_3253 0.76 +0.6 3,493,799 + +0.1 3,493,838 - -1.1
Or see this region's nucleotide sequence