Strain Fitness in Dechlorosoma suillum PS around Dsui_3246

Experiment: ALP with Zinc 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3244 and Dsui_3245 are separated by 66 nucleotidesDsui_3245 and Dsui_3246 are separated by 12 nucleotidesDsui_3246 and Dsui_3247 overlap by 1 nucleotidesDsui_3247 and Dsui_3248 are separated by 12 nucleotides Dsui_3244: Dsui_3244 - GMP synthase family protein, at 3,486,751 to 3,487,461 _3244 Dsui_3245: Dsui_3245 - hypothetical protein, at 3,487,528 to 3,488,022 _3245 Dsui_3246: Dsui_3246 - hypothetical protein, at 3,488,035 to 3,488,349 _3246 Dsui_3247: Dsui_3247 - Protein of unknown function (DUF2788), at 3,488,349 to 3,488,570 _3247 Dsui_3248: Dsui_3248 - argininosuccinate synthase, at 3,488,583 to 3,489,812 _3248 Position (kb) 3488 3489Strain fitness (log2 ratio) -2 -1 0 1at 3487.036 kb on + strand, within Dsui_3244at 3487.092 kb on - strand, within Dsui_3244at 3487.094 kb on + strand, within Dsui_3244at 3487.094 kb on + strand, within Dsui_3244at 3487.102 kb on - strand, within Dsui_3244at 3487.132 kb on - strand, within Dsui_3244at 3487.177 kb on - strand, within Dsui_3244at 3487.188 kb on + strand, within Dsui_3244at 3487.196 kb on - strand, within Dsui_3244at 3487.251 kb on + strand, within Dsui_3244at 3487.252 kb on + strand, within Dsui_3244at 3487.371 kb on - strand, within Dsui_3244at 3487.464 kb on + strandat 3487.592 kb on - strand, within Dsui_3245at 3487.739 kb on + strand, within Dsui_3245at 3487.835 kb on + strand, within Dsui_3245at 3487.835 kb on + strand, within Dsui_3245at 3487.835 kb on + strand, within Dsui_3245at 3487.835 kb on + strand, within Dsui_3245at 3487.835 kb on + strand, within Dsui_3245at 3487.835 kb on + strand, within Dsui_3245at 3487.835 kb on + strand, within Dsui_3245at 3487.835 kb on + strand, within Dsui_3245at 3487.835 kb on + strand, within Dsui_3245at 3487.835 kb on + strand, within Dsui_3245at 3487.843 kb on - strand, within Dsui_3245at 3487.843 kb on - strand, within Dsui_3245at 3487.843 kb on - strand, within Dsui_3245at 3487.843 kb on - strand, within Dsui_3245at 3488.035 kb on - strandat 3488.142 kb on - strand, within Dsui_3246at 3488.191 kb on + strand, within Dsui_3246at 3488.193 kb on - strand, within Dsui_3246at 3488.223 kb on - strand, within Dsui_3246at 3488.288 kb on - strand, within Dsui_3246at 3488.300 kb on + strand, within Dsui_3246at 3488.308 kb on - strand, within Dsui_3246at 3488.308 kb on - strand, within Dsui_3246at 3488.323 kb on - strandat 3488.407 kb on - strand, within Dsui_3247at 3488.431 kb on + strand, within Dsui_3247at 3488.438 kb on - strand, within Dsui_3247at 3488.540 kb on - strand, within Dsui_3247at 3488.582 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM
remove
3,487,036 + Dsui_3244 0.40 -0.6
3,487,092 - Dsui_3244 0.48 -1.8
3,487,094 + Dsui_3244 0.48 -0.5
3,487,094 + Dsui_3244 0.48 -1.5
3,487,102 - Dsui_3244 0.49 -2.1
3,487,132 - Dsui_3244 0.54 -1.0
3,487,177 - Dsui_3244 0.60 -2.1
3,487,188 + Dsui_3244 0.61 -0.1
3,487,196 - Dsui_3244 0.63 -1.3
3,487,251 + Dsui_3244 0.70 +0.5
3,487,252 + Dsui_3244 0.70 +0.5
3,487,371 - Dsui_3244 0.87 -0.4
3,487,464 + +0.5
3,487,592 - Dsui_3245 0.13 +0.1
3,487,739 + Dsui_3245 0.43 -0.5
3,487,835 + Dsui_3245 0.62 -0.5
3,487,835 + Dsui_3245 0.62 +0.5
3,487,835 + Dsui_3245 0.62 +0.5
3,487,835 + Dsui_3245 0.62 -2.1
3,487,835 + Dsui_3245 0.62 -0.5
3,487,835 + Dsui_3245 0.62 +0.5
3,487,835 + Dsui_3245 0.62 +0.5
3,487,835 + Dsui_3245 0.62 -0.5
3,487,835 + Dsui_3245 0.62 -1.1
3,487,835 + Dsui_3245 0.62 +0.5
3,487,843 - Dsui_3245 0.64 -0.2
3,487,843 - Dsui_3245 0.64 -0.0
3,487,843 - Dsui_3245 0.64 +0.2
3,487,843 - Dsui_3245 0.64 +0.1
3,488,035 - +0.2
3,488,142 - Dsui_3246 0.34 -0.0
3,488,191 + Dsui_3246 0.50 -2.5
3,488,193 - Dsui_3246 0.50 -0.2
3,488,223 - Dsui_3246 0.60 +0.0
3,488,288 - Dsui_3246 0.80 +0.2
3,488,300 + Dsui_3246 0.84 -1.8
3,488,308 - Dsui_3246 0.87 +0.1
3,488,308 - Dsui_3246 0.87 +0.0
3,488,323 - +0.3
3,488,407 - Dsui_3247 0.26 +0.4
3,488,431 + Dsui_3247 0.37 -0.5
3,488,438 - Dsui_3247 0.40 +0.1
3,488,540 - Dsui_3247 0.86 +0.2
3,488,582 - +0.1

Or see this region's nucleotide sequence