Strain Fitness in Dechlorosoma suillum PS around Dsui_3174

Experiment: ALP with Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3173 and Dsui_3174 are separated by 104 nucleotidesDsui_3174 and Dsui_3175 are separated by 463 nucleotides Dsui_3173: Dsui_3173 - transcriptional regulator, at 3,402,450 to 3,403,376 _3173 Dsui_3174: Dsui_3174 - DNA/RNA helicase, superfamily II, at 3,403,481 to 3,404,902 _3174 Dsui_3175: Dsui_3175 - efflux transporter, outer membrane factor lipoprotein, NodT family, at 3,405,366 to 3,406,901 _3175 Position (kb) 3403 3404 3405Strain fitness (log2 ratio) -2 -1 0 1at 3402.502 kb on + strandat 3402.502 kb on + strandat 3402.558 kb on - strand, within Dsui_3173at 3402.575 kb on - strand, within Dsui_3173at 3402.585 kb on - strand, within Dsui_3173at 3402.621 kb on - strandat 3402.621 kb on - strand, within Dsui_3173at 3402.621 kb on - strandat 3402.709 kb on + strand, within Dsui_3173at 3402.709 kb on + strand, within Dsui_3173at 3402.709 kb on + strand, within Dsui_3173at 3402.833 kb on + strand, within Dsui_3173at 3402.980 kb on + strand, within Dsui_3173at 3403.006 kb on - strandat 3403.168 kb on + strand, within Dsui_3173at 3403.176 kb on - strandat 3403.176 kb on - strandat 3403.183 kb on - strandat 3403.718 kb on + strandat 3403.726 kb on - strand, within Dsui_3174at 3403.796 kb on - strand, within Dsui_3174at 3403.961 kb on + strand, within Dsui_3174at 3404.048 kb on - strand, within Dsui_3174at 3404.452 kb on + strand, within Dsui_3174at 3404.452 kb on + strand, within Dsui_3174at 3404.452 kb on + strandat 3404.460 kb on - strand, within Dsui_3174at 3404.475 kb on - strand, within Dsui_3174at 3404.595 kb on - strand, within Dsui_3174at 3404.734 kb on + strandat 3404.742 kb on - strand, within Dsui_3174at 3404.838 kb on + strandat 3404.838 kb on + strandat 3404.838 kb on + strandat 3404.846 kb on - strandat 3404.846 kb on - strandat 3404.846 kb on - strandat 3404.846 kb on - strandat 3404.846 kb on - strandat 3404.851 kb on - strandat 3404.907 kb on - strandat 3404.922 kb on + strandat 3404.930 kb on - strandat 3404.930 kb on - strandat 3405.081 kb on - strandat 3405.220 kb on + strandat 3405.466 kb on - strandat 3405.466 kb on - strandat 3405.505 kb on + strandat 3405.658 kb on + strand, within Dsui_3175at 3405.680 kb on + strandat 3405.778 kb on + strand, within Dsui_3175

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM
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3,402,502 + -0.6
3,402,502 + +0.0
3,402,558 - Dsui_3173 0.12 -1.5
3,402,575 - Dsui_3173 0.13 -1.5
3,402,585 - Dsui_3173 0.15 +0.5
3,402,621 - +0.5
3,402,621 - Dsui_3173 0.18 +0.5
3,402,621 - +0.5
3,402,709 + Dsui_3173 0.28 +0.0
3,402,709 + Dsui_3173 0.28 -0.1
3,402,709 + Dsui_3173 0.28 -0.1
3,402,833 + Dsui_3173 0.41 -0.1
3,402,980 + Dsui_3173 0.57 -0.3
3,403,006 - +0.5
3,403,168 + Dsui_3173 0.77 +0.1
3,403,176 - +0.5
3,403,176 - -0.1
3,403,183 - -0.5
3,403,718 + +0.5
3,403,726 - Dsui_3174 0.17 +0.1
3,403,796 - Dsui_3174 0.22 +0.1
3,403,961 + Dsui_3174 0.34 +0.5
3,404,048 - Dsui_3174 0.40 +0.1
3,404,452 + Dsui_3174 0.68 -0.5
3,404,452 + Dsui_3174 0.68 -2.3
3,404,452 + +0.5
3,404,460 - Dsui_3174 0.69 +0.0
3,404,475 - Dsui_3174 0.70 -0.0
3,404,595 - Dsui_3174 0.78 +0.1
3,404,734 + +0.5
3,404,742 - Dsui_3174 0.89 +0.4
3,404,838 + +0.5
3,404,838 + +0.5
3,404,838 + -1.5
3,404,846 - -0.1
3,404,846 - +0.2
3,404,846 - +0.4
3,404,846 - +0.2
3,404,846 - -0.0
3,404,851 - +0.5
3,404,907 - +0.2
3,404,922 + +0.5
3,404,930 - -0.1
3,404,930 - +0.2
3,405,081 - -1.1
3,405,220 + +0.5
3,405,466 - -0.5
3,405,466 - +0.5
3,405,505 + +0.5
3,405,658 + Dsui_3175 0.19 -1.1
3,405,680 + -0.5
3,405,778 + Dsui_3175 0.27 +0.5

Or see this region's nucleotide sequence