Strain Fitness in Dechlorosoma suillum PS around Dsui_3150

Experiment: ALP with Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3149 and Dsui_3150 overlap by 8 nucleotidesDsui_3150 and Dsui_3151 are separated by 25 nucleotidesDsui_3151 and Dsui_3152 overlap by 4 nucleotides Dsui_3149: Dsui_3149 - electron transfer flavoprotein, alpha subunit, at 3,370,956 to 3,372,038 _3149 Dsui_3150: Dsui_3150 - electron transfer flavoprotein, beta subunit, at 3,372,031 to 3,372,915 _3150 Dsui_3151: Dsui_3151 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 3,372,941 to 3,373,630 _3151 Dsui_3152: Dsui_3152 - histidine kinase, at 3,373,627 to 3,375,126 _3152 Position (kb) 3372 3373Strain fitness (log2 ratio) -2 -1 0 1at 3371.205 kb on + strandat 3371.251 kb on + strand, within Dsui_3149at 3371.306 kb on - strand, within Dsui_3149at 3371.435 kb on + strandat 3371.438 kb on - strand, within Dsui_3149at 3371.564 kb on - strand, within Dsui_3149at 3371.663 kb on + strandat 3371.869 kb on - strandat 3371.900 kb on - strand, within Dsui_3149at 3372.045 kb on + strandat 3372.070 kb on - strandat 3372.133 kb on - strand, within Dsui_3150at 3372.135 kb on - strandat 3372.135 kb on - strand, within Dsui_3150at 3372.157 kb on - strand, within Dsui_3150at 3372.521 kb on - strandat 3372.523 kb on + strandat 3372.560 kb on + strand, within Dsui_3150at 3372.727 kb on - strand, within Dsui_3150at 3372.744 kb on + strand, within Dsui_3150at 3372.817 kb on - strand, within Dsui_3150at 3373.008 kb on - strandat 3373.045 kb on + strandat 3373.049 kb on - strand, within Dsui_3151at 3373.294 kb on - strand, within Dsui_3151at 3373.782 kb on - strand, within Dsui_3152at 3373.808 kb on - strandat 3373.871 kb on - strand, within Dsui_3152at 3373.909 kb on - strand, within Dsui_3152

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM
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3,371,205 + +0.5
3,371,251 + Dsui_3149 0.27 -1.1
3,371,306 - Dsui_3149 0.32 -0.5
3,371,435 + +0.5
3,371,438 - Dsui_3149 0.45 -0.5
3,371,564 - Dsui_3149 0.56 +0.5
3,371,663 + +0.5
3,371,869 - +0.5
3,371,900 - Dsui_3149 0.87 +0.5
3,372,045 + +0.5
3,372,070 - -1.5
3,372,133 - Dsui_3150 0.12 -1.9
3,372,135 - +0.5
3,372,135 - Dsui_3150 0.12 +0.5
3,372,157 - Dsui_3150 0.14 -0.5
3,372,521 - -0.5
3,372,523 + +0.5
3,372,560 + Dsui_3150 0.60 -0.5
3,372,727 - Dsui_3150 0.79 -1.5
3,372,744 + Dsui_3150 0.81 -1.1
3,372,817 - Dsui_3150 0.89 -1.1
3,373,008 - +0.5
3,373,045 + -1.1
3,373,049 - Dsui_3151 0.16 +0.5
3,373,294 - Dsui_3151 0.51 -1.8
3,373,782 - Dsui_3152 0.10 +0.5
3,373,808 - +0.5
3,373,871 - Dsui_3152 0.16 -1.1
3,373,909 - Dsui_3152 0.19 -1.5

Or see this region's nucleotide sequence