Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3110 and Dsui_3111 are separated by 285 nucleotides Dsui_3111 and Dsui_3112 are separated by 10 nucleotides Dsui_3112 and Dsui_3113 overlap by 4 nucleotides
Dsui_3110: Dsui_3110 - nitric oxide reductase large subunit, at 3,331,380 to 3,332,756
_3110
Dsui_3111: Dsui_3111 - hypothetical protein, at 3,333,042 to 3,334,334
_3111
Dsui_3112: Dsui_3112 - hypothetical protein, at 3,334,345 to 3,334,791
_3112
Dsui_3113: Dsui_3113 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,334,788 to 3,337,169
_3113
Position (kb)
3333
3334
3335 Strain fitness (log2 ratio)
-2
-1
0
1 at 3332.044 kb on - strand, within Dsui_3110 at 3332.049 kb on + strand, within Dsui_3110 at 3332.191 kb on + strand, within Dsui_3110 at 3332.355 kb on - strand at 3332.355 kb on - strand, within Dsui_3110 at 3332.419 kb on + strand, within Dsui_3110 at 3332.461 kb on + strand, within Dsui_3110 at 3332.529 kb on - strand at 3332.616 kb on + strand, within Dsui_3110 at 3332.647 kb on - strand at 3332.738 kb on + strand at 3332.783 kb on + strand at 3332.907 kb on - strand at 3332.959 kb on - strand at 3333.017 kb on + strand at 3333.040 kb on - strand at 3333.063 kb on + strand at 3333.071 kb on - strand at 3333.071 kb on - strand at 3333.071 kb on - strand at 3333.105 kb on - strand at 3333.234 kb on + strand, within Dsui_3111 at 3333.371 kb on + strand, within Dsui_3111 at 3333.371 kb on + strand, within Dsui_3111 at 3333.437 kb on - strand at 3333.469 kb on + strand, within Dsui_3111 at 3333.477 kb on - strand at 3333.538 kb on + strand, within Dsui_3111 at 3333.538 kb on + strand, within Dsui_3111 at 3333.541 kb on - strand, within Dsui_3111 at 3333.651 kb on + strand, within Dsui_3111 at 3333.682 kb on + strand, within Dsui_3111 at 3333.694 kb on - strand at 3333.789 kb on - strand, within Dsui_3111 at 3334.040 kb on + strand, within Dsui_3111 at 3334.067 kb on + strand, within Dsui_3111 at 3334.132 kb on + strand, within Dsui_3111 at 3334.166 kb on - strand at 3334.182 kb on - strand at 3334.231 kb on - strand at 3334.240 kb on + strand at 3334.421 kb on + strand, within Dsui_3112 at 3334.469 kb on + strand, within Dsui_3112 at 3334.514 kb on + strand, within Dsui_3112 at 3334.522 kb on - strand at 3334.580 kb on + strand, within Dsui_3112 at 3334.650 kb on - strand, within Dsui_3112 at 3334.686 kb on + strand, within Dsui_3112 at 3334.741 kb on + strand, within Dsui_3112 at 3334.752 kb on + strand at 3334.752 kb on + strand at 3334.850 kb on - strand at 3334.851 kb on - strand at 3335.200 kb on + strand, within Dsui_3113 at 3335.239 kb on + strand, within Dsui_3113
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 3,332,044 - Dsui_3110 0.48 +0.5 3,332,049 + Dsui_3110 0.49 +0.5 3,332,191 + Dsui_3110 0.59 -1.1 3,332,355 - +0.5 3,332,355 - Dsui_3110 0.71 -1.1 3,332,419 + Dsui_3110 0.75 +0.5 3,332,461 + Dsui_3110 0.79 -0.5 3,332,529 - +0.5 3,332,616 + Dsui_3110 0.90 -0.5 3,332,647 - -0.5 3,332,738 + -0.5 3,332,783 + -1.1 3,332,907 - -1.5 3,332,959 - -1.8 3,333,017 + -0.8 3,333,040 - +0.5 3,333,063 + -0.8 3,333,071 - -1.1 3,333,071 - -1.1 3,333,071 - -0.5 3,333,105 - +0.5 3,333,234 + Dsui_3111 0.15 -1.3 3,333,371 + Dsui_3111 0.25 -1.0 3,333,371 + Dsui_3111 0.25 -0.7 3,333,437 - -0.5 3,333,469 + Dsui_3111 0.33 -0.5 3,333,477 - -1.1 3,333,538 + Dsui_3111 0.38 -0.5 3,333,538 + Dsui_3111 0.38 -0.5 3,333,541 - Dsui_3111 0.39 -2.7 3,333,651 + Dsui_3111 0.47 -1.5 3,333,682 + Dsui_3111 0.49 +0.5 3,333,694 - -0.5 3,333,789 - Dsui_3111 0.58 -2.5 3,334,040 + Dsui_3111 0.77 -2.3 3,334,067 + Dsui_3111 0.79 +0.5 3,334,132 + Dsui_3111 0.84 -1.1 3,334,166 - +0.5 3,334,182 - +0.5 3,334,231 - -1.1 3,334,240 + -1.5 3,334,421 + Dsui_3112 0.17 -2.3 3,334,469 + Dsui_3112 0.28 -1.5 3,334,514 + Dsui_3112 0.38 -0.8 3,334,522 - -0.5 3,334,580 + Dsui_3112 0.53 -1.3 3,334,650 - Dsui_3112 0.68 -0.5 3,334,686 + Dsui_3112 0.76 -0.5 3,334,741 + Dsui_3112 0.89 -1.4 3,334,752 + -1.8 3,334,752 + -1.5 3,334,850 - +0.5 3,334,851 - -0.5 3,335,200 + Dsui_3113 0.17 -0.5 3,335,239 + Dsui_3113 0.19 +0.5
Or see this region's nucleotide sequence