Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3015 and Dsui_3016 are separated by 59 nucleotides Dsui_3016 and Dsui_3017 are separated by 159 nucleotides Dsui_3017 and Dsui_3018 are separated by 36 nucleotides Dsui_3018 and Dsui_3019 are separated by 9 nucleotides Dsui_3019 and Dsui_3020 are separated by 22 nucleotides
Dsui_3015: Dsui_3015 - hypothetical protein, at 3,230,021 to 3,230,548
_3015
Dsui_3016: Dsui_3016 - hypothetical protein, at 3,230,608 to 3,230,928
_3016
Dsui_3017: Dsui_3017 - uncharacterized conserved small protein containing a coiled-coil domain, at 3,231,088 to 3,231,300
_3017
Dsui_3018: Dsui_3018 - OAH/OAS sulfhydrylase, at 3,231,337 to 3,232,638
_3018
Dsui_3019: Dsui_3019 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 3,232,648 to 3,233,433
_3019
Dsui_3020: Dsui_3020 - Protein of unknown function (DUF3124), at 3,233,456 to 3,233,968
_3020
Position (kb)
3231
3232
3233 Strain fitness (log2 ratio)
-2
-1
0
1 at 3230.400 kb on - strand at 3230.510 kb on - strand at 3230.664 kb on - strand, within Dsui_3016 at 3230.664 kb on - strand, within Dsui_3016 at 3230.670 kb on - strand, within Dsui_3016 at 3230.759 kb on - strand, within Dsui_3016 at 3230.769 kb on - strand, within Dsui_3016 at 3230.872 kb on - strand, within Dsui_3016 at 3230.952 kb on - strand at 3230.958 kb on + strand at 3230.966 kb on - strand at 3230.971 kb on - strand at 3230.971 kb on - strand at 3231.076 kb on + strand at 3231.104 kb on - strand at 3231.204 kb on + strand, within Dsui_3017 at 3231.368 kb on + strand at 3231.432 kb on + strand at 3231.468 kb on + strand, within Dsui_3018 at 3231.572 kb on + strand, within Dsui_3018 at 3231.698 kb on + strand, within Dsui_3018 at 3231.743 kb on + strand, within Dsui_3018 at 3231.805 kb on + strand, within Dsui_3018 at 3231.823 kb on - strand, within Dsui_3018 at 3231.905 kb on + strand, within Dsui_3018 at 3231.908 kb on - strand at 3231.913 kb on - strand, within Dsui_3018 at 3231.913 kb on - strand, within Dsui_3018 at 3231.913 kb on - strand at 3231.915 kb on + strand, within Dsui_3018 at 3231.943 kb on - strand at 3231.954 kb on - strand at 3232.003 kb on + strand, within Dsui_3018 at 3232.080 kb on - strand at 3232.218 kb on + strand, within Dsui_3018 at 3232.380 kb on + strand, within Dsui_3018 at 3232.433 kb on + strand, within Dsui_3018 at 3232.505 kb on - strand at 3232.515 kb on + strand at 3232.759 kb on + strand, within Dsui_3019 at 3233.019 kb on + strand, within Dsui_3019 at 3233.027 kb on - strand, within Dsui_3019 at 3233.040 kb on + strand, within Dsui_3019 at 3233.048 kb on - strand, within Dsui_3019 at 3233.048 kb on - strand, within Dsui_3019 at 3233.216 kb on + strand, within Dsui_3019 at 3233.239 kb on + strand, within Dsui_3019 at 3233.427 kb on + strand at 3233.435 kb on - strand at 3233.435 kb on - strand at 3233.493 kb on - strand at 3233.596 kb on + strand, within Dsui_3020
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 3,230,400 - -0.5 3,230,510 - -2.1 3,230,664 - Dsui_3016 0.17 +0.1 3,230,664 - Dsui_3016 0.17 -0.4 3,230,670 - Dsui_3016 0.19 -0.1 3,230,759 - Dsui_3016 0.47 -0.1 3,230,769 - Dsui_3016 0.50 -0.5 3,230,872 - Dsui_3016 0.82 -0.1 3,230,952 - -1.3 3,230,958 + +0.5 3,230,966 - +0.0 3,230,971 - +0.1 3,230,971 - -1.0 3,231,076 + -0.7 3,231,104 - -1.1 3,231,204 + Dsui_3017 0.54 -0.5 3,231,368 + -1.7 3,231,432 + -1.1 3,231,468 + Dsui_3018 0.10 -0.9 3,231,572 + Dsui_3018 0.18 -1.2 3,231,698 + Dsui_3018 0.28 -1.3 3,231,743 + Dsui_3018 0.31 -1.1 3,231,805 + Dsui_3018 0.36 +0.5 3,231,823 - Dsui_3018 0.37 -1.1 3,231,905 + Dsui_3018 0.44 -0.4 3,231,908 - +0.5 3,231,913 - Dsui_3018 0.44 +0.5 3,231,913 - Dsui_3018 0.44 -1.1 3,231,913 - +0.5 3,231,915 + Dsui_3018 0.44 -0.7 3,231,943 - +0.5 3,231,954 - -1.5 3,232,003 + Dsui_3018 0.51 -1.7 3,232,080 - +0.5 3,232,218 + Dsui_3018 0.68 -0.5 3,232,380 + Dsui_3018 0.80 -0.8 3,232,433 + Dsui_3018 0.84 -0.5 3,232,505 - -0.5 3,232,515 + -1.1 3,232,759 + Dsui_3019 0.14 -0.8 3,233,019 + Dsui_3019 0.47 -0.7 3,233,027 - Dsui_3019 0.48 +0.5 3,233,040 + Dsui_3019 0.50 -0.2 3,233,048 - Dsui_3019 0.51 -1.1 3,233,048 - Dsui_3019 0.51 +0.5 3,233,216 + Dsui_3019 0.72 -0.5 3,233,239 + Dsui_3019 0.75 -0.6 3,233,427 + -0.8 3,233,435 - +0.5 3,233,435 - +0.5 3,233,493 - -2.3 3,233,596 + Dsui_3020 0.27 -0.9
Or see this region's nucleotide sequence