Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2991 and Dsui_2992 are separated by 3 nucleotides Dsui_2992 and Dsui_2993 are separated by 94 nucleotides
Dsui_2991: Dsui_2991 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,198,830 to 3,201,253
_2991
Dsui_2992: Dsui_2992 - hypothetical protein, at 3,201,257 to 3,202,438
_2992
Dsui_2993: Dsui_2993 - hypothetical protein, at 3,202,533 to 3,203,900
_2993
Position (kb)
3201
3202
3203 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3200.301 kb on - strand, within Dsui_2991 at 3200.334 kb on - strand at 3200.421 kb on + strand, within Dsui_2991 at 3200.421 kb on + strand, within Dsui_2991 at 3200.429 kb on - strand, within Dsui_2991 at 3200.524 kb on + strand at 3200.524 kb on + strand, within Dsui_2991 at 3200.790 kb on + strand, within Dsui_2991 at 3200.892 kb on - strand at 3201.328 kb on + strand at 3201.336 kb on - strand at 3201.563 kb on + strand, within Dsui_2992 at 3201.592 kb on + strand, within Dsui_2992 at 3201.805 kb on + strand, within Dsui_2992 at 3201.823 kb on - strand at 3201.823 kb on - strand at 3201.832 kb on - strand at 3201.963 kb on + strand at 3201.971 kb on - strand, within Dsui_2992 at 3201.977 kb on + strand, within Dsui_2992 at 3202.002 kb on - strand, within Dsui_2992 at 3202.085 kb on - strand at 3202.112 kb on + strand, within Dsui_2992 at 3202.117 kb on + strand, within Dsui_2992 at 3202.139 kb on - strand, within Dsui_2992 at 3202.159 kb on + strand, within Dsui_2992 at 3202.214 kb on + strand, within Dsui_2992 at 3202.224 kb on + strand, within Dsui_2992 at 3202.305 kb on + strand, within Dsui_2992 at 3202.328 kb on + strand at 3202.388 kb on + strand at 3202.434 kb on + strand at 3202.554 kb on + strand at 3202.598 kb on - strand at 3202.981 kb on - strand at 3203.014 kb on - strand, within Dsui_2993 at 3203.072 kb on - strand, within Dsui_2993 at 3203.087 kb on + strand at 3203.087 kb on + strand at 3203.133 kb on - strand at 3203.204 kb on - strand, within Dsui_2993 at 3203.323 kb on - strand at 3203.404 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 3,200,301 - Dsui_2991 0.61 -1.5 3,200,334 - -0.5 3,200,421 + Dsui_2991 0.66 +0.5 3,200,421 + Dsui_2991 0.66 -1.5 3,200,429 - Dsui_2991 0.66 -2.5 3,200,524 + +0.5 3,200,524 + Dsui_2991 0.70 -3.0 3,200,790 + Dsui_2991 0.81 -1.8 3,200,892 - +0.5 3,201,328 + -0.5 3,201,336 - +0.5 3,201,563 + Dsui_2992 0.26 -0.5 3,201,592 + Dsui_2992 0.28 +0.5 3,201,805 + Dsui_2992 0.46 +0.5 3,201,823 - +0.5 3,201,823 - -0.5 3,201,832 - -0.5 3,201,963 + +0.5 3,201,971 - Dsui_2992 0.60 -0.1 3,201,977 + Dsui_2992 0.61 -1.5 3,202,002 - Dsui_2992 0.63 -2.1 3,202,085 - -0.5 3,202,112 + Dsui_2992 0.72 -1.5 3,202,117 + Dsui_2992 0.73 -1.1 3,202,139 - Dsui_2992 0.75 -2.5 3,202,159 + Dsui_2992 0.76 -1.1 3,202,214 + Dsui_2992 0.81 +0.5 3,202,224 + Dsui_2992 0.82 -3.0 3,202,305 + Dsui_2992 0.89 +0.5 3,202,328 + -1.1 3,202,388 + +0.5 3,202,434 + -1.5 3,202,554 + +0.5 3,202,598 - -0.5 3,202,981 - +0.5 3,203,014 - Dsui_2993 0.35 -2.1 3,203,072 - Dsui_2993 0.39 -0.5 3,203,087 + +0.5 3,203,087 + +0.5 3,203,133 - +0.5 3,203,204 - Dsui_2993 0.49 -1.1 3,203,323 - +0.5 3,203,404 + +0.5
Or see this region's nucleotide sequence