Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2947 and Dsui_2948 are separated by 170 nucleotides Dsui_2948 and Dsui_2949 overlap by 1 nucleotides Dsui_2949 and Dsui_2950 are separated by 132 nucleotides
Dsui_2947: Dsui_2947 - putative metal-dependent hydrolase, at 3,153,913 to 3,154,479
_2947
Dsui_2948: Dsui_2948 - RNA polymerase sigma factor, sigma-70 family, at 3,154,650 to 3,155,147
_2948
Dsui_2949: Dsui_2949 - Fe2+-dicitrate sensor, membrane component, at 3,155,147 to 3,156,166
_2949
Dsui_2950: Dsui_2950 - TonB-dependent siderophore receptor, at 3,156,299 to 3,158,701
_2950
Position (kb)
3155
3156
3157 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3154.195 kb on - strand, within Dsui_2947 at 3154.233 kb on + strand, within Dsui_2947 at 3154.282 kb on + strand, within Dsui_2947 at 3154.315 kb on + strand, within Dsui_2947 at 3154.323 kb on - strand, within Dsui_2947 at 3154.394 kb on - strand at 3154.540 kb on - strand at 3154.540 kb on - strand at 3154.601 kb on + strand at 3154.609 kb on - strand at 3154.653 kb on + strand at 3154.690 kb on - strand at 3154.690 kb on - strand at 3154.690 kb on - strand at 3154.824 kb on - strand, within Dsui_2948 at 3154.859 kb on - strand at 3154.889 kb on - strand, within Dsui_2948 at 3154.894 kb on - strand, within Dsui_2948 at 3154.899 kb on + strand, within Dsui_2948 at 3154.962 kb on + strand, within Dsui_2948 at 3154.967 kb on + strand, within Dsui_2948 at 3155.164 kb on - strand at 3155.272 kb on + strand, within Dsui_2949 at 3155.286 kb on + strand, within Dsui_2949 at 3155.499 kb on + strand, within Dsui_2949 at 3155.616 kb on - strand, within Dsui_2949 at 3155.852 kb on - strand at 3155.910 kb on + strand, within Dsui_2949 at 3156.078 kb on - strand at 3156.111 kb on + strand at 3156.116 kb on + strand at 3156.160 kb on + strand at 3156.160 kb on + strand at 3156.168 kb on - strand at 3156.181 kb on - strand at 3156.251 kb on + strand at 3156.499 kb on - strand at 3156.539 kb on - strand at 3156.601 kb on - strand, within Dsui_2950 at 3156.607 kb on - strand at 3156.626 kb on + strand, within Dsui_2950 at 3156.627 kb on + strand, within Dsui_2950 at 3156.770 kb on + strand, within Dsui_2950 at 3156.801 kb on - strand at 3156.882 kb on - strand at 3156.945 kb on + strand at 3156.945 kb on + strand, within Dsui_2950 at 3156.953 kb on - strand, within Dsui_2950 at 3156.991 kb on + strand, within Dsui_2950 at 3156.991 kb on + strand at 3157.021 kb on + strand, within Dsui_2950 at 3157.028 kb on + strand, within Dsui_2950 at 3157.076 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 3,154,195 - Dsui_2947 0.50 +0.5 3,154,233 + Dsui_2947 0.56 +0.5 3,154,282 + Dsui_2947 0.65 +0.5 3,154,315 + Dsui_2947 0.71 -0.5 3,154,323 - Dsui_2947 0.72 -1.1 3,154,394 - +0.5 3,154,540 - +0.5 3,154,540 - -0.5 3,154,601 + +0.2 3,154,609 - +0.5 3,154,653 + -0.4 3,154,690 - +0.5 3,154,690 - +0.5 3,154,690 - +0.5 3,154,824 - Dsui_2948 0.35 -0.5 3,154,859 - +0.5 3,154,889 - Dsui_2948 0.48 -0.5 3,154,894 - Dsui_2948 0.49 -1.0 3,154,899 + Dsui_2948 0.50 -0.3 3,154,962 + Dsui_2948 0.63 +0.2 3,154,967 + Dsui_2948 0.64 -1.9 3,155,164 - +0.5 3,155,272 + Dsui_2949 0.12 -0.8 3,155,286 + Dsui_2949 0.14 -1.5 3,155,499 + Dsui_2949 0.35 -3.6 3,155,616 - Dsui_2949 0.46 -1.8 3,155,852 - +0.5 3,155,910 + Dsui_2949 0.75 -1.5 3,156,078 - -1.0 3,156,111 + -1.5 3,156,116 + -0.0 3,156,160 + +1.5 3,156,160 + -0.8 3,156,168 - +0.5 3,156,181 - +0.5 3,156,251 + -1.5 3,156,499 - -1.0 3,156,539 - -0.5 3,156,601 - Dsui_2950 0.13 -2.0 3,156,607 - +0.6 3,156,626 + Dsui_2950 0.14 -1.4 3,156,627 + Dsui_2950 0.14 -1.0 3,156,770 + Dsui_2950 0.20 -0.4 3,156,801 - -2.0 3,156,882 - -0.4 3,156,945 + +0.6 3,156,945 + Dsui_2950 0.27 -0.4 3,156,953 - Dsui_2950 0.27 -1.0 3,156,991 + Dsui_2950 0.29 +0.6 3,156,991 + +0.6 3,157,021 + Dsui_2950 0.30 +0.6 3,157,028 + Dsui_2950 0.30 +0.6 3,157,076 - -0.4
Or see this region's nucleotide sequence