Strain Fitness in Dechlorosoma suillum PS around Dsui_2949

Experiment: ALP with Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2947 and Dsui_2948 are separated by 170 nucleotidesDsui_2948 and Dsui_2949 overlap by 1 nucleotidesDsui_2949 and Dsui_2950 are separated by 132 nucleotides Dsui_2947: Dsui_2947 - putative metal-dependent hydrolase, at 3,153,913 to 3,154,479 _2947 Dsui_2948: Dsui_2948 - RNA polymerase sigma factor, sigma-70 family, at 3,154,650 to 3,155,147 _2948 Dsui_2949: Dsui_2949 - Fe2+-dicitrate sensor, membrane component, at 3,155,147 to 3,156,166 _2949 Dsui_2950: Dsui_2950 - TonB-dependent siderophore receptor, at 3,156,299 to 3,158,701 _2950 Position (kb) 3155 3156 3157Strain fitness (log2 ratio) -3 -2 -1 0 1at 3154.195 kb on - strand, within Dsui_2947at 3154.233 kb on + strand, within Dsui_2947at 3154.282 kb on + strand, within Dsui_2947at 3154.315 kb on + strand, within Dsui_2947at 3154.323 kb on - strand, within Dsui_2947at 3154.394 kb on - strandat 3154.540 kb on - strandat 3154.540 kb on - strandat 3154.601 kb on + strandat 3154.609 kb on - strandat 3154.653 kb on + strandat 3154.690 kb on - strandat 3154.690 kb on - strandat 3154.690 kb on - strandat 3154.824 kb on - strand, within Dsui_2948at 3154.859 kb on - strandat 3154.889 kb on - strand, within Dsui_2948at 3154.894 kb on - strand, within Dsui_2948at 3154.899 kb on + strand, within Dsui_2948at 3154.962 kb on + strand, within Dsui_2948at 3154.967 kb on + strand, within Dsui_2948at 3155.164 kb on - strandat 3155.272 kb on + strand, within Dsui_2949at 3155.286 kb on + strand, within Dsui_2949at 3155.499 kb on + strand, within Dsui_2949at 3155.616 kb on - strand, within Dsui_2949at 3155.852 kb on - strandat 3155.910 kb on + strand, within Dsui_2949at 3156.078 kb on - strandat 3156.111 kb on + strandat 3156.116 kb on + strandat 3156.160 kb on + strandat 3156.160 kb on + strandat 3156.168 kb on - strandat 3156.181 kb on - strandat 3156.251 kb on + strandat 3156.499 kb on - strandat 3156.539 kb on - strandat 3156.601 kb on - strand, within Dsui_2950at 3156.607 kb on - strandat 3156.626 kb on + strand, within Dsui_2950at 3156.627 kb on + strand, within Dsui_2950at 3156.770 kb on + strand, within Dsui_2950at 3156.801 kb on - strandat 3156.882 kb on - strandat 3156.945 kb on + strandat 3156.945 kb on + strand, within Dsui_2950at 3156.953 kb on - strand, within Dsui_2950at 3156.991 kb on + strand, within Dsui_2950at 3156.991 kb on + strandat 3157.021 kb on + strand, within Dsui_2950at 3157.028 kb on + strand, within Dsui_2950at 3157.076 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM
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3,154,195 - Dsui_2947 0.50 +0.5
3,154,233 + Dsui_2947 0.56 +0.5
3,154,282 + Dsui_2947 0.65 +0.5
3,154,315 + Dsui_2947 0.71 -0.5
3,154,323 - Dsui_2947 0.72 -1.1
3,154,394 - +0.5
3,154,540 - +0.5
3,154,540 - -0.5
3,154,601 + +0.2
3,154,609 - +0.5
3,154,653 + -0.4
3,154,690 - +0.5
3,154,690 - +0.5
3,154,690 - +0.5
3,154,824 - Dsui_2948 0.35 -0.5
3,154,859 - +0.5
3,154,889 - Dsui_2948 0.48 -0.5
3,154,894 - Dsui_2948 0.49 -1.0
3,154,899 + Dsui_2948 0.50 -0.3
3,154,962 + Dsui_2948 0.63 +0.2
3,154,967 + Dsui_2948 0.64 -1.9
3,155,164 - +0.5
3,155,272 + Dsui_2949 0.12 -0.8
3,155,286 + Dsui_2949 0.14 -1.5
3,155,499 + Dsui_2949 0.35 -3.6
3,155,616 - Dsui_2949 0.46 -1.8
3,155,852 - +0.5
3,155,910 + Dsui_2949 0.75 -1.5
3,156,078 - -1.0
3,156,111 + -1.5
3,156,116 + -0.0
3,156,160 + +1.5
3,156,160 + -0.8
3,156,168 - +0.5
3,156,181 - +0.5
3,156,251 + -1.5
3,156,499 - -1.0
3,156,539 - -0.5
3,156,601 - Dsui_2950 0.13 -2.0
3,156,607 - +0.6
3,156,626 + Dsui_2950 0.14 -1.4
3,156,627 + Dsui_2950 0.14 -1.0
3,156,770 + Dsui_2950 0.20 -0.4
3,156,801 - -2.0
3,156,882 - -0.4
3,156,945 + +0.6
3,156,945 + Dsui_2950 0.27 -0.4
3,156,953 - Dsui_2950 0.27 -1.0
3,156,991 + Dsui_2950 0.29 +0.6
3,156,991 + +0.6
3,157,021 + Dsui_2950 0.30 +0.6
3,157,028 + Dsui_2950 0.30 +0.6
3,157,076 - -0.4

Or see this region's nucleotide sequence