Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2879 and Dsui_2880 are separated by 231 nucleotides Dsui_2880 and Dsui_2881 overlap by 4 nucleotides
Dsui_2879: Dsui_2879 - methyl-accepting chemotaxis protein, at 3,074,009 to 3,075,505
_2879
Dsui_2880: Dsui_2880 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 3,075,737 to 3,077,080
_2880
Dsui_2881: Dsui_2881 - 8-amino-7-oxononanoate synthase, at 3,077,077 to 3,078,252
_2881
Position (kb)
3075
3076
3077
3078 Strain fitness (log2 ratio)
-1
0
1 at 3074.882 kb on - strand, within Dsui_2879 at 3074.917 kb on - strand, within Dsui_2879 at 3075.027 kb on + strand at 3075.048 kb on + strand, within Dsui_2879 at 3075.062 kb on - strand, within Dsui_2879 at 3075.149 kb on - strand, within Dsui_2879 at 3075.149 kb on - strand, within Dsui_2879 at 3075.305 kb on - strand, within Dsui_2879 at 3075.399 kb on - strand at 3075.470 kb on - strand at 3075.526 kb on + strand at 3075.526 kb on + strand at 3075.528 kb on + strand at 3075.536 kb on - strand at 3075.656 kb on + strand at 3075.669 kb on + strand at 3075.687 kb on - strand at 3075.701 kb on + strand at 3075.720 kb on + strand at 3075.720 kb on - strand at 3075.733 kb on + strand at 3075.842 kb on + strand at 3075.858 kb on + strand at 3075.978 kb on - strand, within Dsui_2880 at 3076.112 kb on + strand, within Dsui_2880 at 3076.205 kb on - strand at 3076.245 kb on - strand, within Dsui_2880 at 3076.264 kb on - strand at 3076.264 kb on - strand, within Dsui_2880 at 3076.429 kb on + strand, within Dsui_2880 at 3076.455 kb on + strand, within Dsui_2880 at 3076.620 kb on - strand at 3076.629 kb on + strand, within Dsui_2880 at 3076.641 kb on + strand, within Dsui_2880 at 3076.649 kb on - strand at 3076.810 kb on + strand, within Dsui_2880 at 3076.831 kb on + strand, within Dsui_2880 at 3076.907 kb on - strand at 3076.954 kb on - strand at 3077.009 kb on - strand at 3077.111 kb on - strand at 3077.219 kb on + strand, within Dsui_2881 at 3077.227 kb on - strand at 3077.724 kb on - strand, within Dsui_2881 at 3077.838 kb on - strand, within Dsui_2881 at 3077.869 kb on - strand, within Dsui_2881 at 3077.915 kb on + strand, within Dsui_2881 at 3078.077 kb on + strand, within Dsui_2881
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 3,074,882 - Dsui_2879 0.58 -0.1 3,074,917 - Dsui_2879 0.61 +0.1 3,075,027 + -0.4 3,075,048 + Dsui_2879 0.69 -1.7 3,075,062 - Dsui_2879 0.70 -0.2 3,075,149 - Dsui_2879 0.76 +0.0 3,075,149 - Dsui_2879 0.76 -0.1 3,075,305 - Dsui_2879 0.87 -0.1 3,075,399 - -0.2 3,075,470 - -0.1 3,075,526 + +0.6 3,075,526 + +0.6 3,075,528 + +0.6 3,075,536 - -0.3 3,075,656 + -0.5 3,075,669 + -0.1 3,075,687 - +0.6 3,075,701 + -0.2 3,075,720 + -0.2 3,075,720 - -0.4 3,075,733 + -0.1 3,075,842 + -0.4 3,075,858 + -0.4 3,075,978 - Dsui_2880 0.18 +0.6 3,076,112 + Dsui_2880 0.28 -0.3 3,076,205 - +0.6 3,076,245 - Dsui_2880 0.38 +0.6 3,076,264 - +0.6 3,076,264 - Dsui_2880 0.39 -1.4 3,076,429 + Dsui_2880 0.51 +0.1 3,076,455 + Dsui_2880 0.53 -0.2 3,076,620 - -1.0 3,076,629 + Dsui_2880 0.66 -0.1 3,076,641 + Dsui_2880 0.67 -0.3 3,076,649 - -0.4 3,076,810 + Dsui_2880 0.80 -0.4 3,076,831 + Dsui_2880 0.81 -0.2 3,076,907 - -1.0 3,076,954 - +0.6 3,077,009 - -0.4 3,077,111 - +0.6 3,077,219 + Dsui_2881 0.12 -0.2 3,077,227 - +0.6 3,077,724 - Dsui_2881 0.55 -0.4 3,077,838 - Dsui_2881 0.65 -0.4 3,077,869 - Dsui_2881 0.67 -1.0 3,077,915 + Dsui_2881 0.71 -0.6 3,078,077 + Dsui_2881 0.85 -0.3
Or see this region's nucleotide sequence