Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2878 and Dsui_2879 are separated by 318 nucleotides Dsui_2879 and Dsui_2880 are separated by 231 nucleotides
Dsui_2878: Dsui_2878 - ABC-type antimicrobial peptide transport system, permease component, at 3,072,470 to 3,073,690
_2878
Dsui_2879: Dsui_2879 - methyl-accepting chemotaxis protein, at 3,074,009 to 3,075,505
_2879
Dsui_2880: Dsui_2880 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 3,075,737 to 3,077,080
_2880
Position (kb)
3074
3075
3076 Strain fitness (log2 ratio)
-2
-1
0
1 at 3073.085 kb on + strand, within Dsui_2878 at 3073.228 kb on - strand, within Dsui_2878 at 3073.417 kb on + strand, within Dsui_2878 at 3073.514 kb on - strand, within Dsui_2878 at 3073.715 kb on - strand at 3073.716 kb on + strand at 3073.729 kb on + strand at 3073.764 kb on + strand at 3073.805 kb on - strand at 3073.821 kb on + strand at 3073.829 kb on - strand at 3074.155 kb on - strand at 3074.588 kb on + strand, within Dsui_2879 at 3074.685 kb on + strand at 3074.734 kb on + strand, within Dsui_2879 at 3074.882 kb on - strand, within Dsui_2879 at 3074.917 kb on - strand, within Dsui_2879 at 3075.027 kb on + strand at 3075.048 kb on + strand, within Dsui_2879 at 3075.062 kb on - strand, within Dsui_2879 at 3075.149 kb on - strand, within Dsui_2879 at 3075.149 kb on - strand, within Dsui_2879 at 3075.305 kb on - strand, within Dsui_2879 at 3075.399 kb on - strand at 3075.470 kb on - strand at 3075.526 kb on + strand at 3075.526 kb on + strand at 3075.528 kb on + strand at 3075.536 kb on - strand at 3075.656 kb on + strand at 3075.669 kb on + strand at 3075.687 kb on - strand at 3075.701 kb on + strand at 3075.720 kb on + strand at 3075.720 kb on - strand at 3075.733 kb on + strand at 3075.842 kb on + strand at 3075.858 kb on + strand at 3075.978 kb on - strand, within Dsui_2880 at 3076.112 kb on + strand, within Dsui_2880 at 3076.205 kb on - strand at 3076.245 kb on - strand, within Dsui_2880 at 3076.264 kb on - strand at 3076.264 kb on - strand, within Dsui_2880 at 3076.429 kb on + strand, within Dsui_2880 at 3076.455 kb on + strand, within Dsui_2880
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 3,073,085 + Dsui_2878 0.50 -0.7 3,073,228 - Dsui_2878 0.62 -1.4 3,073,417 + Dsui_2878 0.78 +0.0 3,073,514 - Dsui_2878 0.86 -0.4 3,073,715 - -1.4 3,073,716 + -2.4 3,073,729 + +1.2 3,073,764 + +0.6 3,073,805 - +0.6 3,073,821 + -1.0 3,073,829 - -1.0 3,074,155 - -0.1 3,074,588 + Dsui_2879 0.39 -0.4 3,074,685 + -0.4 3,074,734 + Dsui_2879 0.48 +0.6 3,074,882 - Dsui_2879 0.58 -0.1 3,074,917 - Dsui_2879 0.61 +0.1 3,075,027 + -0.4 3,075,048 + Dsui_2879 0.69 -1.7 3,075,062 - Dsui_2879 0.70 -0.2 3,075,149 - Dsui_2879 0.76 +0.0 3,075,149 - Dsui_2879 0.76 -0.1 3,075,305 - Dsui_2879 0.87 -0.1 3,075,399 - -0.2 3,075,470 - -0.1 3,075,526 + +0.6 3,075,526 + +0.6 3,075,528 + +0.6 3,075,536 - -0.3 3,075,656 + -0.5 3,075,669 + -0.1 3,075,687 - +0.6 3,075,701 + -0.2 3,075,720 + -0.2 3,075,720 - -0.4 3,075,733 + -0.1 3,075,842 + -0.4 3,075,858 + -0.4 3,075,978 - Dsui_2880 0.18 +0.6 3,076,112 + Dsui_2880 0.28 -0.3 3,076,205 - +0.6 3,076,245 - Dsui_2880 0.38 +0.6 3,076,264 - +0.6 3,076,264 - Dsui_2880 0.39 -1.4 3,076,429 + Dsui_2880 0.51 +0.1 3,076,455 + Dsui_2880 0.53 -0.2
Or see this region's nucleotide sequence