Strain Fitness in Dechlorosoma suillum PS around Dsui_2746

Experiment: ALP with Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2745 and Dsui_2746 are separated by 209 nucleotidesDsui_2746 and Dsui_2747 are separated by 102 nucleotides Dsui_2745: Dsui_2745 - methyl-accepting chemotaxis protein, at 2,899,398 to 2,901,026 _2745 Dsui_2746: Dsui_2746 - ATP-binding cassette protein, ChvD family, at 2,901,236 to 2,902,900 _2746 Dsui_2747: Dsui_2747 - uncharacterized integral membrane protein, at 2,903,003 to 2,903,860 _2747 Position (kb) 2901 2902 2903Strain fitness (log2 ratio) -3 -2 -1 0 1at 2900.670 kb on - strand, within Dsui_2745at 2900.693 kb on + strand, within Dsui_2745at 2900.786 kb on + strand, within Dsui_2745at 2900.810 kb on + strandat 2900.960 kb on - strandat 2901.211 kb on + strandat 2901.212 kb on + strandat 2901.221 kb on + strandat 2901.229 kb on - strandat 2901.268 kb on + strandat 2901.281 kb on - strandat 2901.350 kb on + strandat 2901.385 kb on + strandat 2901.422 kb on + strand, within Dsui_2746at 2901.430 kb on - strandat 2901.553 kb on + strand, within Dsui_2746at 2901.553 kb on + strand, within Dsui_2746at 2901.759 kb on - strand, within Dsui_2746at 2901.831 kb on + strand, within Dsui_2746at 2901.839 kb on - strand, within Dsui_2746at 2901.943 kb on - strand, within Dsui_2746at 2902.020 kb on - strand, within Dsui_2746at 2902.027 kb on + strand, within Dsui_2746at 2902.068 kb on + strand, within Dsui_2746at 2902.171 kb on + strand, within Dsui_2746at 2902.186 kb on - strand, within Dsui_2746at 2902.225 kb on + strand, within Dsui_2746at 2902.317 kb on + strand, within Dsui_2746at 2902.352 kb on + strand, within Dsui_2746at 2902.401 kb on + strand, within Dsui_2746at 2902.406 kb on + strand, within Dsui_2746at 2902.406 kb on + strand, within Dsui_2746at 2902.406 kb on + strand, within Dsui_2746at 2902.432 kb on + strand, within Dsui_2746at 2902.464 kb on + strand, within Dsui_2746at 2902.473 kb on + strand, within Dsui_2746at 2902.595 kb on - strand, within Dsui_2746at 2902.752 kb on + strandat 2902.755 kb on + strandat 2902.770 kb on - strandat 2902.816 kb on + strandat 2902.819 kb on + strandat 2902.864 kb on + strandat 2902.864 kb on + strandat 2902.864 kb on + strandat 2902.872 kb on - strandat 2902.872 kb on - strandat 2902.888 kb on + strandat 2902.922 kb on - strandat 2902.958 kb on + strandat 2903.016 kb on - strandat 2903.018 kb on + strandat 2903.174 kb on - strand, within Dsui_2747at 2903.189 kb on - strand, within Dsui_2747at 2903.313 kb on - strand, within Dsui_2747at 2903.316 kb on + strand, within Dsui_2747at 2903.348 kb on + strand, within Dsui_2747at 2903.361 kb on + strand, within Dsui_2747at 2903.369 kb on - strand, within Dsui_2747at 2903.374 kb on - strand, within Dsui_2747at 2903.460 kb on - strandat 2903.531 kb on - strand, within Dsui_2747at 2903.615 kb on - strand, within Dsui_2747at 2903.658 kb on + strand, within Dsui_2747at 2903.666 kb on - strand, within Dsui_2747at 2903.666 kb on - strand, within Dsui_2747at 2903.666 kb on - strand, within Dsui_2747at 2903.666 kb on - strand, within Dsui_2747at 2903.714 kb on - strand, within Dsui_2747at 2903.754 kb on + strand, within Dsui_2747at 2903.784 kb on - strandat 2903.792 kb on + strandat 2903.820 kb on + strandat 2903.820 kb on + strandat 2903.820 kb on + strandat 2903.831 kb on + strandat 2903.846 kb on - strandat 2903.854 kb on + strandat 2903.867 kb on - strandat 2903.874 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM
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2,900,670 - Dsui_2745 0.78 -1.4
2,900,693 + Dsui_2745 0.79 -1.4
2,900,786 + Dsui_2745 0.85 -0.4
2,900,810 + -0.4
2,900,960 - +0.6
2,901,211 + -0.2
2,901,212 + -0.2
2,901,221 + -0.6
2,901,229 - +0.6
2,901,268 + +0.1
2,901,281 - +0.6
2,901,350 + +0.0
2,901,385 + +0.1
2,901,422 + Dsui_2746 0.11 +0.2
2,901,430 - -0.4
2,901,553 + Dsui_2746 0.19 +0.1
2,901,553 + Dsui_2746 0.19 +0.1
2,901,759 - Dsui_2746 0.31 -1.4
2,901,831 + Dsui_2746 0.36 -0.6
2,901,839 - Dsui_2746 0.36 -0.4
2,901,943 - Dsui_2746 0.42 -0.4
2,902,020 - Dsui_2746 0.47 +0.6
2,902,027 + Dsui_2746 0.48 -0.1
2,902,068 + Dsui_2746 0.50 +0.3
2,902,171 + Dsui_2746 0.56 +0.2
2,902,186 - Dsui_2746 0.57 -0.4
2,902,225 + Dsui_2746 0.59 +0.2
2,902,317 + Dsui_2746 0.65 +0.1
2,902,352 + Dsui_2746 0.67 +0.0
2,902,401 + Dsui_2746 0.70 -0.1
2,902,406 + Dsui_2746 0.70 +0.0
2,902,406 + Dsui_2746 0.70 +0.2
2,902,406 + Dsui_2746 0.70 -0.1
2,902,432 + Dsui_2746 0.72 -0.1
2,902,464 + Dsui_2746 0.74 +0.1
2,902,473 + Dsui_2746 0.74 +0.1
2,902,595 - Dsui_2746 0.82 -0.4
2,902,752 + +0.2
2,902,755 + +0.1
2,902,770 - -1.0
2,902,816 + +0.0
2,902,819 + +0.3
2,902,864 + +0.0
2,902,864 + -0.2
2,902,864 + +0.4
2,902,872 - +0.6
2,902,872 - -0.4
2,902,888 + +0.2
2,902,922 - +0.6
2,902,958 + +0.6
2,903,016 - +0.6
2,903,018 + -0.4
2,903,174 - Dsui_2747 0.20 +0.6
2,903,189 - Dsui_2747 0.22 -0.4
2,903,313 - Dsui_2747 0.36 -1.0
2,903,316 + Dsui_2747 0.36 -2.0
2,903,348 + Dsui_2747 0.40 -0.4
2,903,361 + Dsui_2747 0.42 -1.7
2,903,369 - Dsui_2747 0.43 +0.6
2,903,374 - Dsui_2747 0.43 +0.6
2,903,460 - -1.0
2,903,531 - Dsui_2747 0.62 +0.6
2,903,615 - Dsui_2747 0.71 +0.6
2,903,658 + Dsui_2747 0.76 -2.0
2,903,666 - Dsui_2747 0.77 -1.0
2,903,666 - Dsui_2747 0.77 -1.0
2,903,666 - Dsui_2747 0.77 -0.4
2,903,666 - Dsui_2747 0.77 -0.4
2,903,714 - Dsui_2747 0.83 -0.4
2,903,754 + Dsui_2747 0.88 -1.6
2,903,784 - +0.6
2,903,792 + -0.8
2,903,820 + -2.6
2,903,820 + -1.2
2,903,820 + -0.4
2,903,831 + +0.6
2,903,846 - +0.6
2,903,854 + +0.2
2,903,867 - +0.6
2,903,874 - -2.9

Or see this region's nucleotide sequence