Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2675 and Dsui_2676 overlap by 1 nucleotides Dsui_2676 and Dsui_2677 are separated by 199 nucleotides Dsui_2677 and Dsui_2678 are separated by 85 nucleotides
Dsui_2675: Dsui_2675 - SsrA-binding protein, at 2,826,955 to 2,827,401
_2675
Dsui_2676: Dsui_2676 - putative membrane protein, at 2,827,401 to 2,828,021
_2676
Dsui_2677: Dsui_2677 - phosphoenolpyruvate synthase, at 2,828,221 to 2,830,596
_2677
Dsui_2678: Dsui_2678 - hypothetical protein, at 2,830,682 to 2,831,524
_2678
Position (kb)
2828
2829
2830
2831 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2827.403 kb on - strand at 2827.426 kb on - strand at 2827.429 kb on - strand at 2827.439 kb on - strand at 2827.530 kb on + strand, within Dsui_2676 at 2827.598 kb on - strand, within Dsui_2676 at 2827.612 kb on - strand, within Dsui_2676 at 2827.995 kb on - strand at 2828.010 kb on + strand at 2828.018 kb on - strand at 2828.076 kb on + strand at 2828.125 kb on + strand at 2828.133 kb on - strand at 2828.191 kb on + strand at 2830.644 kb on - strand at 2830.649 kb on + strand at 2830.649 kb on + strand at 2830.657 kb on - strand at 2830.657 kb on - strand at 2830.686 kb on + strand at 2830.766 kb on - strand at 2830.772 kb on - strand, within Dsui_2678 at 2830.776 kb on - strand at 2830.783 kb on + strand, within Dsui_2678 at 2830.783 kb on + strand, within Dsui_2678 at 2830.787 kb on - strand, within Dsui_2678 at 2830.791 kb on - strand at 2830.798 kb on + strand, within Dsui_2678 at 2830.804 kb on - strand at 2830.843 kb on - strand, within Dsui_2678 at 2830.847 kb on - strand, within Dsui_2678 at 2830.887 kb on + strand, within Dsui_2678 at 2830.920 kb on + strand, within Dsui_2678 at 2830.948 kb on + strand, within Dsui_2678 at 2830.980 kb on + strand, within Dsui_2678 at 2830.988 kb on - strand, within Dsui_2678 at 2831.028 kb on + strand, within Dsui_2678 at 2831.277 kb on + strand, within Dsui_2678 at 2831.406 kb on - strand at 2831.442 kb on + strand at 2831.442 kb on + strand at 2831.450 kb on - strand at 2831.540 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 2,827,403 - -1.0 2,827,426 - -0.4 2,827,429 - +0.6 2,827,439 - -2.0 2,827,530 + Dsui_2676 0.21 -1.3 2,827,598 - Dsui_2676 0.32 +0.6 2,827,612 - Dsui_2676 0.34 -2.6 2,827,995 - +0.6 2,828,010 + -0.7 2,828,018 - -0.4 2,828,076 + -0.4 2,828,125 + +3.4 2,828,133 - +0.6 2,828,191 + -1.7 2,830,644 - -1.1 2,830,649 + -1.4 2,830,649 + -0.4 2,830,657 - +0.6 2,830,657 - +0.6 2,830,686 + +0.2 2,830,766 - -0.4 2,830,772 - Dsui_2678 0.11 +0.6 2,830,776 - +0.6 2,830,783 + Dsui_2678 0.12 +0.2 2,830,783 + Dsui_2678 0.12 +0.1 2,830,787 - Dsui_2678 0.12 -1.0 2,830,791 - +0.6 2,830,798 + Dsui_2678 0.14 +0.2 2,830,804 - +0.6 2,830,843 - Dsui_2678 0.19 -1.4 2,830,847 - Dsui_2678 0.20 -2.2 2,830,887 + Dsui_2678 0.24 -0.1 2,830,920 + Dsui_2678 0.28 +0.0 2,830,948 + Dsui_2678 0.32 +0.5 2,830,980 + Dsui_2678 0.35 +0.2 2,830,988 - Dsui_2678 0.36 -1.4 2,831,028 + Dsui_2678 0.41 +0.4 2,831,277 + Dsui_2678 0.71 +0.5 2,831,406 - +0.6 2,831,442 + -0.0 2,831,442 + +0.0 2,831,450 - -1.4 2,831,540 + -0.1
Or see this region's nucleotide sequence