Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2476 and Dsui_2477 are separated by 70 nucleotides Dsui_2477 and Dsui_2478 are separated by 17 nucleotides Dsui_2478 and Dsui_2479 overlap by 4 nucleotides Dsui_2479 and Dsui_2480 are separated by 6 nucleotides Dsui_2480 and Dsui_2481 overlap by 4 nucleotides Dsui_2481 and Dsui_2482 are separated by 71 nucleotides
Dsui_2476: Dsui_2476 - hypothetical protein, at 2,629,423 to 2,629,626
_2476
Dsui_2477: Dsui_2477 - tRNA-Leu, at 2,629,697 to 2,629,781
_2477
Dsui_2478: Dsui_2478 - hypothetical protein, at 2,629,799 to 2,630,239
_2478
Dsui_2479: Dsui_2479 - hypothetical protein, at 2,630,236 to 2,630,511
_2479
Dsui_2480: Dsui_2480 - nitrous oxidase accessory protein, at 2,630,518 to 2,631,753
_2480
Dsui_2481: Dsui_2481 - DNA polymerase III, epsilon subunit, at 2,631,750 to 2,632,469
_2481
Dsui_2482: Dsui_2482 - ribonuclease HI, at 2,632,541 to 2,632,993
_2482
Position (kb)
2630
2631
2632 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2629.653 kb on + strand at 2629.779 kb on + strand at 2629.814 kb on - strand at 2629.818 kb on + strand at 2629.852 kb on - strand, within Dsui_2478 at 2629.888 kb on - strand, within Dsui_2478 at 2629.902 kb on - strand, within Dsui_2478 at 2629.907 kb on - strand, within Dsui_2478 at 2629.944 kb on + strand, within Dsui_2478 at 2629.955 kb on + strand, within Dsui_2478 at 2630.021 kb on - strand, within Dsui_2478 at 2630.228 kb on + strand at 2630.253 kb on + strand at 2630.267 kb on - strand at 2630.293 kb on + strand, within Dsui_2479 at 2630.431 kb on - strand, within Dsui_2479 at 2630.446 kb on - strand, within Dsui_2479 at 2630.481 kb on + strand, within Dsui_2479 at 2630.505 kb on + strand at 2630.505 kb on + strand at 2630.513 kb on - strand at 2630.573 kb on - strand at 2630.665 kb on - strand, within Dsui_2480 at 2630.702 kb on + strand, within Dsui_2480 at 2630.746 kb on + strand, within Dsui_2480 at 2630.749 kb on - strand, within Dsui_2480 at 2630.792 kb on + strand, within Dsui_2480 at 2630.799 kb on - strand, within Dsui_2480 at 2630.884 kb on + strand at 2631.108 kb on - strand, within Dsui_2480 at 2631.293 kb on - strand, within Dsui_2480 at 2631.381 kb on + strand at 2631.415 kb on + strand, within Dsui_2480 at 2631.428 kb on - strand, within Dsui_2480 at 2631.493 kb on - strand, within Dsui_2480 at 2631.663 kb on + strand at 2631.734 kb on - strand at 2632.499 kb on - strand at 2632.524 kb on - strand at 2632.524 kb on - strand at 2632.545 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 2,629,653 + +0.6 2,629,779 + +0.4 2,629,814 - -0.4 2,629,818 + -0.2 2,629,852 - Dsui_2478 0.12 -0.4 2,629,888 - Dsui_2478 0.20 +0.6 2,629,902 - Dsui_2478 0.23 -2.4 2,629,907 - Dsui_2478 0.24 +0.6 2,629,944 + Dsui_2478 0.33 -0.0 2,629,955 + Dsui_2478 0.35 -0.3 2,630,021 - Dsui_2478 0.50 -0.4 2,630,228 + -0.3 2,630,253 + -0.2 2,630,267 - +0.6 2,630,293 + Dsui_2479 0.21 -0.0 2,630,431 - Dsui_2479 0.71 -0.4 2,630,446 - Dsui_2479 0.76 -3.0 2,630,481 + Dsui_2479 0.89 -0.4 2,630,505 + +0.3 2,630,505 + -0.2 2,630,513 - -0.4 2,630,573 - -1.0 2,630,665 - Dsui_2480 0.12 -0.8 2,630,702 + Dsui_2480 0.15 -0.4 2,630,746 + Dsui_2480 0.18 -1.1 2,630,749 - Dsui_2480 0.19 -1.8 2,630,792 + Dsui_2480 0.22 -1.0 2,630,799 - Dsui_2480 0.23 -0.4 2,630,884 + +0.6 2,631,108 - Dsui_2480 0.48 -1.8 2,631,293 - Dsui_2480 0.63 -2.0 2,631,381 + +0.6 2,631,415 + Dsui_2480 0.73 -0.4 2,631,428 - Dsui_2480 0.74 -0.1 2,631,493 - Dsui_2480 0.79 -0.5 2,631,663 + +0.6 2,631,734 - -0.1 2,632,499 - -0.1 2,632,524 - -0.3 2,632,524 - +0.2 2,632,545 - -0.2
Or see this region's nucleotide sequence