Strain Fitness in Dechlorosoma suillum PS around Dsui_2421

Experiment: ALP with Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2420 and Dsui_2421 overlap by 35 nucleotidesDsui_2421 and Dsui_2422 are separated by 47 nucleotidesDsui_2422 and Dsui_2423 are separated by 270 nucleotides Dsui_2420: Dsui_2420 - uncharacterized radical SAM protein YgiQ, at 2,577,638 to 2,579,956 _2420 Dsui_2421: Dsui_2421 - EAL domain-containing protein, at 2,579,922 to 2,581,223 _2421 Dsui_2422: Dsui_2422 - truncated hemoglobin, at 2,581,271 to 2,581,657 _2422 Dsui_2423: Dsui_2423 - GTP-binding protein TypA/BipA, at 2,581,928 to 2,583,742 _2423 Position (kb) 2579 2580 2581 2582Strain fitness (log2 ratio) -2 -1 0 1at 2578.922 kb on - strandat 2578.964 kb on + strand, within Dsui_2420at 2578.980 kb on + strand, within Dsui_2420at 2579.031 kb on + strand, within Dsui_2420at 2579.043 kb on + strand, within Dsui_2420at 2579.079 kb on - strandat 2579.085 kb on + strand, within Dsui_2420at 2579.341 kb on + strand, within Dsui_2420at 2579.397 kb on - strand, within Dsui_2420at 2579.451 kb on - strand, within Dsui_2420at 2579.459 kb on + strand, within Dsui_2420at 2579.467 kb on - strandat 2579.479 kb on + strand, within Dsui_2420at 2579.480 kb on + strand, within Dsui_2420at 2579.544 kb on + strand, within Dsui_2420at 2579.552 kb on - strand, within Dsui_2420at 2579.615 kb on + strand, within Dsui_2420at 2579.914 kb on + strandat 2579.925 kb on + strandat 2579.928 kb on - strandat 2579.975 kb on + strandat 2580.005 kb on + strandat 2580.028 kb on - strandat 2580.033 kb on - strandat 2580.041 kb on + strandat 2580.111 kb on - strand, within Dsui_2421at 2580.193 kb on - strand, within Dsui_2421at 2580.251 kb on + strand, within Dsui_2421at 2580.251 kb on + strand, within Dsui_2421at 2580.254 kb on - strand, within Dsui_2421at 2580.259 kb on - strand, within Dsui_2421at 2580.263 kb on + strand, within Dsui_2421at 2580.281 kb on - strand, within Dsui_2421at 2580.291 kb on + strand, within Dsui_2421at 2580.318 kb on - strand, within Dsui_2421at 2580.323 kb on + strand, within Dsui_2421at 2580.355 kb on - strand, within Dsui_2421at 2580.383 kb on + strand, within Dsui_2421at 2580.391 kb on - strand, within Dsui_2421at 2580.406 kb on + strand, within Dsui_2421at 2580.414 kb on - strand, within Dsui_2421at 2580.427 kb on - strand, within Dsui_2421at 2580.501 kb on - strand, within Dsui_2421at 2580.502 kb on + strand, within Dsui_2421at 2580.539 kb on - strand, within Dsui_2421at 2580.642 kb on - strand, within Dsui_2421at 2580.695 kb on - strand, within Dsui_2421at 2580.738 kb on + strand, within Dsui_2421at 2580.809 kb on - strand, within Dsui_2421at 2580.841 kb on - strand, within Dsui_2421at 2580.937 kb on - strand, within Dsui_2421at 2580.958 kb on + strand, within Dsui_2421at 2580.958 kb on + strand, within Dsui_2421at 2580.976 kb on + strand, within Dsui_2421at 2580.989 kb on + strand, within Dsui_2421at 2581.029 kb on + strand, within Dsui_2421at 2581.153 kb on + strandat 2581.181 kb on + strandat 2581.198 kb on - strandat 2581.198 kb on - strandat 2581.307 kb on + strandat 2581.398 kb on + strand, within Dsui_2422at 2581.406 kb on - strandat 2581.407 kb on + strand, within Dsui_2422at 2581.413 kb on + strandat 2581.451 kb on - strand, within Dsui_2422at 2581.530 kb on + strand, within Dsui_2422at 2581.556 kb on + strand, within Dsui_2422at 2581.563 kb on + strand, within Dsui_2422at 2581.749 kb on + strandat 2581.842 kb on + strandat 2581.886 kb on + strandat 2581.886 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM
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2,578,922 - +0.6
2,578,964 + Dsui_2420 0.57 +0.1
2,578,980 + Dsui_2420 0.58 -0.4
2,579,031 + Dsui_2420 0.60 -0.2
2,579,043 + Dsui_2420 0.61 -0.4
2,579,079 - +0.6
2,579,085 + Dsui_2420 0.62 -0.3
2,579,341 + Dsui_2420 0.73 -0.1
2,579,397 - Dsui_2420 0.76 +0.6
2,579,451 - Dsui_2420 0.78 -0.4
2,579,459 + Dsui_2420 0.79 -0.2
2,579,467 - +0.6
2,579,479 + Dsui_2420 0.79 -0.2
2,579,480 + Dsui_2420 0.79 -0.8
2,579,544 + Dsui_2420 0.82 -0.1
2,579,552 - Dsui_2420 0.83 -2.0
2,579,615 + Dsui_2420 0.85 -0.5
2,579,914 + +0.2
2,579,925 + -0.1
2,579,928 - -0.6
2,579,975 + +0.1
2,580,005 + -0.1
2,580,028 - -0.2
2,580,033 - -0.3
2,580,041 + -0.3
2,580,111 - Dsui_2421 0.15 -0.5
2,580,193 - Dsui_2421 0.21 +0.1
2,580,251 + Dsui_2421 0.25 +0.1
2,580,251 + Dsui_2421 0.25 -1.0
2,580,254 - Dsui_2421 0.25 -0.2
2,580,259 - Dsui_2421 0.26 -0.1
2,580,263 + Dsui_2421 0.26 -1.0
2,580,281 - Dsui_2421 0.28 +0.2
2,580,291 + Dsui_2421 0.28 +0.4
2,580,318 - Dsui_2421 0.30 +0.1
2,580,323 + Dsui_2421 0.31 -0.5
2,580,355 - Dsui_2421 0.33 -0.2
2,580,383 + Dsui_2421 0.35 +1.4
2,580,391 - Dsui_2421 0.36 +0.2
2,580,406 + Dsui_2421 0.37 -1.0
2,580,414 - Dsui_2421 0.38 -0.3
2,580,427 - Dsui_2421 0.39 -0.3
2,580,501 - Dsui_2421 0.44 -0.4
2,580,502 + Dsui_2421 0.45 +1.6
2,580,539 - Dsui_2421 0.47 -0.5
2,580,642 - Dsui_2421 0.55 -0.2
2,580,695 - Dsui_2421 0.59 +0.1
2,580,738 + Dsui_2421 0.63 +0.6
2,580,809 - Dsui_2421 0.68 -0.3
2,580,841 - Dsui_2421 0.71 +0.0
2,580,937 - Dsui_2421 0.78 +0.1
2,580,958 + Dsui_2421 0.80 -0.2
2,580,958 + Dsui_2421 0.80 +0.1
2,580,976 + Dsui_2421 0.81 -1.7
2,580,989 + Dsui_2421 0.82 -0.4
2,581,029 + Dsui_2421 0.85 -2.4
2,581,153 + -0.8
2,581,181 + -0.7
2,581,198 - -0.0
2,581,198 - -0.1
2,581,307 + -0.4
2,581,398 + Dsui_2422 0.33 -0.8
2,581,406 - -0.7
2,581,407 + Dsui_2422 0.35 -0.6
2,581,413 + -1.4
2,581,451 - Dsui_2422 0.47 -1.0
2,581,530 + Dsui_2422 0.67 -0.7
2,581,556 + Dsui_2422 0.74 -0.4
2,581,563 + Dsui_2422 0.75 -1.8
2,581,749 + -2.2
2,581,842 + +0.0
2,581,886 + -0.3
2,581,886 + -0.0

Or see this region's nucleotide sequence