Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2364 and Dsui_2365 are separated by 0 nucleotides Dsui_2365 and Dsui_2366 are separated by 84 nucleotides Dsui_2366 and Dsui_2367 are separated by 101 nucleotides
Dsui_2364: Dsui_2364 - ABC-type sugar transport system, periplasmic component, at 2,513,766 to 2,514,707
_2364
Dsui_2365: Dsui_2365 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,514,708 to 2,517,632
_2365
Dsui_2366: Dsui_2366 - inositol monophosphatase/fructose-1,6-bisphosphatase family protein, at 2,517,717 to 2,518,520
_2366
Dsui_2367: Dsui_2367 - RNA methyltransferase, TrmH family, group 1, at 2,518,622 to 2,519,401
_2367
Position (kb)
2514
2515
2516
2517
2518 Strain fitness (log2 ratio)
-2
-1
0
1 at 2513.798 kb on + strand at 2513.819 kb on + strand at 2513.821 kb on - strand at 2513.875 kb on + strand, within Dsui_2364 at 2513.877 kb on + strand, within Dsui_2364 at 2513.910 kb on + strand at 2514.031 kb on + strand at 2514.094 kb on - strand at 2514.101 kb on - strand at 2514.156 kb on + strand, within Dsui_2364 at 2514.162 kb on - strand at 2514.190 kb on - strand at 2514.271 kb on + strand, within Dsui_2364 at 2514.337 kb on + strand, within Dsui_2364 at 2514.337 kb on + strand, within Dsui_2364 at 2514.457 kb on + strand, within Dsui_2364 at 2514.457 kb on + strand, within Dsui_2364 at 2514.491 kb on - strand at 2514.520 kb on + strand, within Dsui_2364 at 2514.564 kb on + strand, within Dsui_2364 at 2514.571 kb on + strand, within Dsui_2364 at 2514.791 kb on + strand at 2514.894 kb on + strand at 2514.955 kb on + strand at 2514.963 kb on - strand at 2515.015 kb on - strand at 2515.075 kb on + strand at 2515.081 kb on - strand at 2515.083 kb on + strand, within Dsui_2365 at 2515.110 kb on + strand, within Dsui_2365 at 2515.198 kb on - strand, within Dsui_2365 at 2515.281 kb on + strand, within Dsui_2365 at 2515.361 kb on + strand, within Dsui_2365 at 2515.414 kb on - strand at 2515.468 kb on + strand, within Dsui_2365 at 2515.494 kb on - strand at 2515.593 kb on - strand at 2515.625 kb on + strand at 2515.630 kb on + strand, within Dsui_2365 at 2515.750 kb on - strand at 2515.802 kb on + strand, within Dsui_2365 at 2515.802 kb on + strand at 2515.802 kb on + strand, within Dsui_2365 at 2515.817 kb on + strand at 2515.884 kb on + strand, within Dsui_2365 at 2515.897 kb on - strand, within Dsui_2365 at 2516.032 kb on + strand, within Dsui_2365 at 2516.274 kb on + strand, within Dsui_2365 at 2516.356 kb on + strand at 2516.411 kb on - strand, within Dsui_2365 at 2516.423 kb on + strand, within Dsui_2365 at 2516.455 kb on - strand, within Dsui_2365 at 2516.479 kb on - strand, within Dsui_2365 at 2516.479 kb on - strand at 2516.479 kb on - strand, within Dsui_2365 at 2516.506 kb on - strand at 2516.711 kb on - strand, within Dsui_2365 at 2516.833 kb on - strand at 2516.930 kb on - strand at 2516.993 kb on + strand, within Dsui_2365 at 2517.276 kb on + strand, within Dsui_2365 at 2517.277 kb on + strand, within Dsui_2365 at 2517.304 kb on + strand, within Dsui_2365 at 2517.323 kb on + strand, within Dsui_2365 at 2517.350 kb on - strand at 2517.350 kb on - strand at 2517.512 kb on - strand at 2517.527 kb on + strand at 2517.535 kb on - strand at 2517.762 kb on - strand at 2517.762 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 2,513,798 + -2.7 2,513,819 + +0.7 2,513,821 - -0.3 2,513,875 + Dsui_2364 0.12 -0.9 2,513,877 + Dsui_2364 0.12 +0.7 2,513,910 + +0.7 2,514,031 + +0.7 2,514,094 - -0.3 2,514,101 - -0.3 2,514,156 + Dsui_2364 0.41 -0.9 2,514,162 - +0.7 2,514,190 - +0.7 2,514,271 + Dsui_2364 0.54 -1.7 2,514,337 + Dsui_2364 0.61 +0.7 2,514,337 + Dsui_2364 0.61 -0.9 2,514,457 + Dsui_2364 0.73 -2.1 2,514,457 + Dsui_2364 0.73 -0.3 2,514,491 - -0.3 2,514,520 + Dsui_2364 0.80 -1.9 2,514,564 + Dsui_2364 0.85 +0.7 2,514,571 + Dsui_2364 0.85 +0.7 2,514,791 + +0.7 2,514,894 + -0.3 2,514,955 + -0.9 2,514,963 - +0.7 2,515,015 - +0.7 2,515,075 + -0.3 2,515,081 - -0.9 2,515,083 + Dsui_2365 0.13 +0.7 2,515,110 + Dsui_2365 0.14 -0.9 2,515,198 - Dsui_2365 0.17 +0.1 2,515,281 + Dsui_2365 0.20 -0.9 2,515,361 + Dsui_2365 0.22 -0.9 2,515,414 - -0.9 2,515,468 + Dsui_2365 0.26 -0.9 2,515,494 - -0.3 2,515,593 - +0.7 2,515,625 + +0.7 2,515,630 + Dsui_2365 0.32 -0.3 2,515,750 - +0.7 2,515,802 + Dsui_2365 0.37 -0.9 2,515,802 + +0.7 2,515,802 + Dsui_2365 0.37 -1.3 2,515,817 + +0.7 2,515,884 + Dsui_2365 0.40 -0.9 2,515,897 - Dsui_2365 0.41 -0.9 2,516,032 + Dsui_2365 0.45 +0.7 2,516,274 + Dsui_2365 0.54 -0.9 2,516,356 + -0.3 2,516,411 - Dsui_2365 0.58 -1.3 2,516,423 + Dsui_2365 0.59 +0.7 2,516,455 - Dsui_2365 0.60 +0.7 2,516,479 - Dsui_2365 0.61 -0.3 2,516,479 - +0.7 2,516,479 - Dsui_2365 0.61 +0.7 2,516,506 - -0.3 2,516,711 - Dsui_2365 0.68 +0.7 2,516,833 - -0.3 2,516,930 - +0.7 2,516,993 + Dsui_2365 0.78 -1.7 2,517,276 + Dsui_2365 0.88 +0.7 2,517,277 + Dsui_2365 0.88 +0.7 2,517,304 + Dsui_2365 0.89 -0.3 2,517,323 + Dsui_2365 0.89 -1.3 2,517,350 - +0.7 2,517,350 - -0.3 2,517,512 - -1.9 2,517,527 + -0.3 2,517,535 - +0.7 2,517,762 - -0.1 2,517,762 - -0.2
Or see this region's nucleotide sequence