Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2324 and Dsui_2325 are separated by 70 nucleotides Dsui_2325 and Dsui_2326 are separated by 151 nucleotides Dsui_2326 and Dsui_2327 are separated by 90 nucleotides Dsui_2327 and Dsui_2328 are separated by 76 nucleotides Dsui_2328 and Dsui_2329 are separated by 57 nucleotides
Dsui_2324: Dsui_2324 - hypothetical protein, at 2,479,500 to 2,479,868
_2324
Dsui_2325: Dsui_2325 - hypothetical protein, at 2,479,939 to 2,480,343
_2325
Dsui_2326: Dsui_2326 - hypothetical protein, at 2,480,495 to 2,480,734
_2326
Dsui_2327: Dsui_2327 - putative toxin-antitoxin system toxin component, PIN family, at 2,480,825 to 2,481,295
_2327
Dsui_2328: Dsui_2328 - hypothetical protein, at 2,481,372 to 2,482,229
_2328
Dsui_2329: Dsui_2329 - putative dehydrogenase, at 2,482,287 to 2,483,414
_2329
Position (kb)
2480
2481
2482 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2479.837 kb on + strand at 2479.884 kb on - strand at 2480.024 kb on + strand at 2480.202 kb on - strand, within Dsui_2325 at 2480.207 kb on - strand, within Dsui_2325 at 2480.238 kb on - strand, within Dsui_2325 at 2480.257 kb on - strand, within Dsui_2325 at 2480.288 kb on + strand at 2480.296 kb on - strand, within Dsui_2325 at 2480.419 kb on - strand at 2480.706 kb on - strand, within Dsui_2326 at 2480.745 kb on - strand at 2481.077 kb on - strand, within Dsui_2327 at 2481.197 kb on + strand at 2481.230 kb on + strand at 2481.268 kb on - strand at 2481.447 kb on - strand at 2481.515 kb on + strand at 2481.534 kb on - strand at 2481.642 kb on + strand at 2481.783 kb on - strand at 2482.061 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 2,479,837 + -0.0 2,479,884 - -0.9 2,480,024 + +0.7 2,480,202 - Dsui_2325 0.65 +0.1 2,480,207 - Dsui_2325 0.66 -2.8 2,480,238 - Dsui_2325 0.74 -0.3 2,480,257 - Dsui_2325 0.79 +0.7 2,480,288 + -0.3 2,480,296 - Dsui_2325 0.88 -1.9 2,480,419 - -0.1 2,480,706 - Dsui_2326 0.88 +0.1 2,480,745 - -0.6 2,481,077 - Dsui_2327 0.54 -2.4 2,481,197 + +0.7 2,481,230 + +0.7 2,481,268 - -1.9 2,481,447 - +0.7 2,481,515 + +0.7 2,481,534 - -0.3 2,481,642 + -0.3 2,481,783 - -1.6 2,482,061 - +0.7
Or see this region's nucleotide sequence