Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2271 and Dsui_2272 are separated by 215 nucleotides Dsui_2272 and Dsui_2273 are separated by 55 nucleotides
Dsui_2271: Dsui_2271 - hypothetical protein, at 2,421,748 to 2,422,731
_2271
Dsui_2272: Dsui_2272 - hypothetical protein, at 2,422,947 to 2,424,431
_2272
Dsui_2273: Dsui_2273 - TonB-dependent siderophore receptor, at 2,424,487 to 2,426,691
_2273
Position (kb)
2422
2423
2424
2425 Strain fitness (log2 ratio)
-2
-1
0
1 at 2422.011 kb on + strand at 2422.050 kb on + strand, within Dsui_2271 at 2422.066 kb on - strand, within Dsui_2271 at 2422.133 kb on - strand, within Dsui_2271 at 2422.287 kb on + strand, within Dsui_2271 at 2422.302 kb on + strand, within Dsui_2271 at 2422.310 kb on - strand, within Dsui_2271 at 2422.339 kb on + strand at 2422.417 kb on + strand at 2422.453 kb on - strand, within Dsui_2271 at 2422.559 kb on - strand, within Dsui_2271 at 2422.574 kb on + strand at 2422.611 kb on + strand at 2422.637 kb on + strand at 2422.730 kb on - strand at 2422.741 kb on + strand at 2422.776 kb on + strand at 2422.950 kb on + strand at 2423.020 kb on - strand at 2423.159 kb on + strand at 2423.167 kb on - strand, within Dsui_2272 at 2423.173 kb on - strand at 2423.244 kb on - strand, within Dsui_2272 at 2423.263 kb on - strand, within Dsui_2272 at 2423.279 kb on - strand, within Dsui_2272 at 2423.561 kb on + strand at 2423.651 kb on + strand at 2423.762 kb on - strand at 2423.844 kb on - strand, within Dsui_2272 at 2423.867 kb on + strand at 2424.259 kb on - strand, within Dsui_2272 at 2424.279 kb on + strand at 2424.295 kb on + strand at 2424.327 kb on - strand at 2424.425 kb on - strand at 2424.518 kb on - strand at 2424.566 kb on + strand at 2424.574 kb on - strand at 2424.623 kb on + strand at 2424.631 kb on - strand at 2424.709 kb on - strand, within Dsui_2273 at 2424.812 kb on - strand, within Dsui_2273 at 2424.836 kb on - strand, within Dsui_2273 at 2425.032 kb on - strand, within Dsui_2273 at 2425.381 kb on - strand, within Dsui_2273
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 2,422,011 + +0.7 2,422,050 + Dsui_2271 0.31 -1.6 2,422,066 - Dsui_2271 0.32 -0.4 2,422,133 - Dsui_2271 0.39 -1.6 2,422,287 + Dsui_2271 0.55 +0.7 2,422,302 + Dsui_2271 0.56 -1.3 2,422,310 - Dsui_2271 0.57 +0.1 2,422,339 + +0.7 2,422,417 + -1.6 2,422,453 - Dsui_2271 0.72 -0.0 2,422,559 - Dsui_2271 0.82 +0.2 2,422,574 + +0.7 2,422,611 + +0.7 2,422,637 + -0.6 2,422,730 - -0.1 2,422,741 + +0.7 2,422,776 + +0.7 2,422,950 + -0.3 2,423,020 - -0.3 2,423,159 + -0.3 2,423,167 - Dsui_2272 0.15 -1.6 2,423,173 - +0.7 2,423,244 - Dsui_2272 0.20 -0.3 2,423,263 - Dsui_2272 0.21 -0.9 2,423,279 - Dsui_2272 0.22 -0.3 2,423,561 + -0.3 2,423,651 + -0.3 2,423,762 - -0.3 2,423,844 - Dsui_2272 0.60 -1.6 2,423,867 + +0.7 2,424,259 - Dsui_2272 0.88 -1.6 2,424,279 + +0.7 2,424,295 + +0.7 2,424,327 - -0.3 2,424,425 - -1.3 2,424,518 - +0.7 2,424,566 + -0.9 2,424,574 - +0.7 2,424,623 + +0.7 2,424,631 - -0.3 2,424,709 - Dsui_2273 0.10 -1.3 2,424,812 - Dsui_2273 0.15 +0.7 2,424,836 - Dsui_2273 0.16 -1.9 2,425,032 - Dsui_2273 0.25 +0.7 2,425,381 - Dsui_2273 0.41 -0.9
Or see this region's nucleotide sequence