Strain Fitness in Dechlorosoma suillum PS around Dsui_2244

Experiment: ALP with Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2242 and Dsui_2243 overlap by 31 nucleotidesDsui_2243 and Dsui_2244 are separated by 6 nucleotidesDsui_2244 and Dsui_2245 are separated by 187 nucleotidesDsui_2245 and Dsui_2246 are separated by 11 nucleotides Dsui_2242: Dsui_2242 - hypothetical protein, at 2,390,052 to 2,390,546 _2242 Dsui_2243: Dsui_2243 - hypothetical protein, at 2,390,516 to 2,390,797 _2243 Dsui_2244: Dsui_2244 - DNA mismatch repair protein MutS, at 2,390,804 to 2,393,407 _2244 Dsui_2245: Dsui_2245 - protein of unknown function (DUF1924), at 2,393,595 to 2,394,017 _2245 Dsui_2246: Dsui_2246 - Diheme cytochrome c, at 2,394,029 to 2,394,508 _2246 Position (kb) 2390 2391 2392 2393 2394Strain fitness (log2 ratio) -2 -1 0 1at 2389.953 kb on + strandat 2389.963 kb on + strandat 2389.974 kb on - strandat 2390.037 kb on + strandat 2390.059 kb on + strandat 2390.059 kb on + strandat 2390.059 kb on + strandat 2390.059 kb on + strandat 2390.059 kb on + strandat 2390.059 kb on + strandat 2390.059 kb on + strandat 2390.059 kb on + strandat 2390.067 kb on - strandat 2390.067 kb on - strandat 2390.193 kb on + strand, within Dsui_2242at 2390.232 kb on + strand, within Dsui_2242at 2390.256 kb on + strand, within Dsui_2242at 2390.386 kb on - strand, within Dsui_2242at 2390.560 kb on + strand, within Dsui_2243at 2390.670 kb on - strand, within Dsui_2243at 2390.732 kb on + strand, within Dsui_2243at 2390.779 kb on + strandat 2390.865 kb on - strandat 2390.899 kb on - strandat 2390.941 kb on - strandat 2390.976 kb on - strandat 2390.983 kb on + strandat 2391.015 kb on + strandat 2391.094 kb on - strand, within Dsui_2244at 2391.144 kb on + strand, within Dsui_2244at 2391.149 kb on + strand, within Dsui_2244at 2391.152 kb on - strand, within Dsui_2244at 2391.170 kb on + strandat 2391.208 kb on + strand, within Dsui_2244at 2391.208 kb on + strandat 2391.216 kb on - strand, within Dsui_2244at 2391.254 kb on + strand, within Dsui_2244at 2391.262 kb on - strand, within Dsui_2244at 2391.424 kb on + strandat 2391.606 kb on + strand, within Dsui_2244at 2391.612 kb on + strandat 2391.685 kb on + strandat 2391.756 kb on + strand, within Dsui_2244at 2391.991 kb on - strand, within Dsui_2244at 2392.003 kb on - strand, within Dsui_2244at 2392.025 kb on + strandat 2392.052 kb on - strand, within Dsui_2244at 2392.338 kb on - strand, within Dsui_2244at 2392.407 kb on - strand, within Dsui_2244at 2392.584 kb on - strand, within Dsui_2244at 2392.614 kb on - strand, within Dsui_2244at 2392.655 kb on - strand, within Dsui_2244at 2392.671 kb on - strand, within Dsui_2244at 2392.764 kb on - strand, within Dsui_2244at 2392.899 kb on - strand, within Dsui_2244at 2392.945 kb on - strand, within Dsui_2244at 2392.945 kb on - strand, within Dsui_2244at 2392.954 kb on + strand, within Dsui_2244at 2393.232 kb on - strandat 2393.232 kb on - strandat 2393.232 kb on - strandat 2393.244 kb on + strandat 2393.337 kb on - strandat 2393.354 kb on - strandat 2393.411 kb on - strandat 2393.412 kb on - strandat 2393.519 kb on + strandat 2393.685 kb on + strandat 2393.775 kb on + strandat 2393.783 kb on - strandat 2393.783 kb on - strandat 2394.067 kb on - strandat 2394.180 kb on + strandat 2394.188 kb on - strandat 2394.200 kb on - strandat 2394.277 kb on - strandat 2394.312 kb on + strand, within Dsui_2246

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM
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2,389,953 + +0.7
2,389,963 + -0.3
2,389,974 - -2.1
2,390,037 + +0.7
2,390,059 + -0.9
2,390,059 + -0.9
2,390,059 + -1.9
2,390,059 + -1.9
2,390,059 + +0.7
2,390,059 + -0.9
2,390,059 + +0.7
2,390,059 + -1.3
2,390,067 - +0.7
2,390,067 - +0.7
2,390,193 + Dsui_2242 0.28 -0.5
2,390,232 + Dsui_2242 0.36 -1.5
2,390,256 + Dsui_2242 0.41 -1.1
2,390,386 - Dsui_2242 0.67 -0.9
2,390,560 + Dsui_2243 0.16 -2.0
2,390,670 - Dsui_2243 0.55 -1.3
2,390,732 + Dsui_2243 0.77 -0.9
2,390,779 + -0.3
2,390,865 - -2.4
2,390,899 - +0.1
2,390,941 - -0.0
2,390,976 - -0.3
2,390,983 + -0.3
2,391,015 + +0.7
2,391,094 - Dsui_2244 0.11 -0.3
2,391,144 + Dsui_2244 0.13 -0.9
2,391,149 + Dsui_2244 0.13 -1.6
2,391,152 - Dsui_2244 0.13 -0.6
2,391,170 + -0.3
2,391,208 + Dsui_2244 0.16 -1.6
2,391,208 + +0.7
2,391,216 - Dsui_2244 0.16 +0.3
2,391,254 + Dsui_2244 0.17 +0.7
2,391,262 - Dsui_2244 0.18 +0.0
2,391,424 + +0.7
2,391,606 + Dsui_2244 0.31 -0.3
2,391,612 + +0.7
2,391,685 + +0.7
2,391,756 + Dsui_2244 0.37 -0.3
2,391,991 - Dsui_2244 0.46 -2.0
2,392,003 - Dsui_2244 0.46 -0.4
2,392,025 + +0.7
2,392,052 - Dsui_2244 0.48 -0.8
2,392,338 - Dsui_2244 0.59 +0.1
2,392,407 - Dsui_2244 0.62 -0.6
2,392,584 - Dsui_2244 0.68 -0.1
2,392,614 - Dsui_2244 0.70 -0.3
2,392,655 - Dsui_2244 0.71 -0.4
2,392,671 - Dsui_2244 0.72 -0.6
2,392,764 - Dsui_2244 0.75 -0.7
2,392,899 - Dsui_2244 0.80 +0.3
2,392,945 - Dsui_2244 0.82 -0.3
2,392,945 - Dsui_2244 0.82 -0.9
2,392,954 + Dsui_2244 0.83 +0.7
2,393,232 - -0.1
2,393,232 - -0.3
2,393,232 - -0.1
2,393,244 + +0.7
2,393,337 - +0.2
2,393,354 - -1.3
2,393,411 - -0.2
2,393,412 - -0.3
2,393,519 + +0.7
2,393,685 + +0.7
2,393,775 + +0.7
2,393,783 - +0.7
2,393,783 - +0.7
2,394,067 - -0.3
2,394,180 + +0.7
2,394,188 - -0.3
2,394,200 - +0.7
2,394,277 - -0.9
2,394,312 + Dsui_2246 0.59 -0.9

Or see this region's nucleotide sequence