Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2228 and Dsui_2229 are separated by 70 nucleotides Dsui_2229 and Dsui_2230 are separated by 95 nucleotides
Dsui_2228: Dsui_2228 - Zn-dependent alcohol dehydrogenase, at 2,368,812 to 2,369,834
_2228
Dsui_2229: Dsui_2229 - transcriptional regulator, at 2,369,905 to 2,370,780
_2229
Dsui_2230: Dsui_2230 - conserved hypothetical integral membrane protein, at 2,370,876 to 2,371,910
_2230
Position (kb)
2369
2370
2371 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2368.975 kb on - strand, within Dsui_2228 at 2368.992 kb on - strand at 2369.084 kb on - strand at 2369.142 kb on - strand at 2369.142 kb on - strand at 2369.222 kb on + strand at 2369.260 kb on + strand at 2369.299 kb on - strand, within Dsui_2228 at 2369.356 kb on + strand at 2369.356 kb on - strand, within Dsui_2228 at 2369.356 kb on - strand, within Dsui_2228 at 2369.356 kb on - strand, within Dsui_2228 at 2369.357 kb on + strand, within Dsui_2228 at 2369.358 kb on + strand at 2369.358 kb on + strand at 2369.366 kb on - strand, within Dsui_2228 at 2369.374 kb on - strand at 2369.413 kb on + strand at 2369.416 kb on + strand at 2369.477 kb on + strand at 2369.485 kb on - strand at 2369.524 kb on + strand at 2369.606 kb on - strand at 2369.636 kb on + strand at 2369.668 kb on - strand at 2369.736 kb on - strand at 2369.736 kb on - strand at 2369.738 kb on + strand at 2369.738 kb on + strand at 2370.078 kb on + strand at 2370.078 kb on + strand at 2370.110 kb on + strand at 2370.118 kb on - strand, within Dsui_2229 at 2370.118 kb on - strand, within Dsui_2229 at 2370.118 kb on - strand, within Dsui_2229 at 2370.163 kb on - strand, within Dsui_2229 at 2370.168 kb on - strand, within Dsui_2229 at 2370.284 kb on - strand, within Dsui_2229 at 2370.292 kb on - strand at 2370.396 kb on - strand, within Dsui_2229 at 2370.401 kb on - strand, within Dsui_2229 at 2370.484 kb on + strand at 2370.510 kb on - strand, within Dsui_2229 at 2370.515 kb on - strand, within Dsui_2229 at 2370.625 kb on - strand, within Dsui_2229 at 2370.642 kb on - strand, within Dsui_2229 at 2370.672 kb on - strand, within Dsui_2229 at 2370.672 kb on - strand, within Dsui_2229 at 2370.691 kb on + strand at 2371.072 kb on + strand, within Dsui_2230 at 2371.085 kb on - strand at 2371.214 kb on - strand at 2371.247 kb on - strand at 2371.247 kb on - strand at 2371.468 kb on + strand at 2371.527 kb on - strand at 2371.672 kb on - strand at 2371.680 kb on + strand at 2371.759 kb on - strand, within Dsui_2230 at 2371.769 kb on - strand, within Dsui_2230
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 2,368,975 - Dsui_2228 0.16 -0.9 2,368,992 - -1.3 2,369,084 - +0.7 2,369,142 - +0.7 2,369,142 - +0.7 2,369,222 + +0.7 2,369,260 + -0.3 2,369,299 - Dsui_2228 0.48 -1.3 2,369,356 + +0.7 2,369,356 - Dsui_2228 0.53 -0.3 2,369,356 - Dsui_2228 0.53 -0.3 2,369,356 - Dsui_2228 0.53 -0.9 2,369,357 + Dsui_2228 0.53 -0.3 2,369,358 + +0.7 2,369,358 + +0.7 2,369,366 - Dsui_2228 0.54 -2.4 2,369,374 - +0.7 2,369,413 + +0.7 2,369,416 + -0.3 2,369,477 + -0.3 2,369,485 - +0.7 2,369,524 + +0.7 2,369,606 - -0.9 2,369,636 + -0.3 2,369,668 - +0.7 2,369,736 - +0.7 2,369,736 - -0.3 2,369,738 + -0.9 2,369,738 + +0.7 2,370,078 + -0.3 2,370,078 + +0.7 2,370,110 + -0.3 2,370,118 - Dsui_2229 0.24 -1.0 2,370,118 - Dsui_2229 0.24 -0.5 2,370,118 - Dsui_2229 0.24 -1.0 2,370,163 - Dsui_2229 0.29 +1.7 2,370,168 - Dsui_2229 0.30 -1.5 2,370,284 - Dsui_2229 0.43 -4.1 2,370,292 - -0.6 2,370,396 - Dsui_2229 0.56 -0.6 2,370,401 - Dsui_2229 0.57 -1.6 2,370,484 + +0.7 2,370,510 - Dsui_2229 0.69 -1.0 2,370,515 - Dsui_2229 0.70 -1.4 2,370,625 - Dsui_2229 0.82 -0.9 2,370,642 - Dsui_2229 0.84 -0.9 2,370,672 - Dsui_2229 0.88 +0.7 2,370,672 - Dsui_2229 0.88 +1.0 2,370,691 + +0.7 2,371,072 + Dsui_2230 0.19 -0.4 2,371,085 - -0.3 2,371,214 - +0.7 2,371,247 - +0.7 2,371,247 - +0.7 2,371,468 + -1.3 2,371,527 - +0.7 2,371,672 - -0.3 2,371,680 + +0.7 2,371,759 - Dsui_2230 0.85 -1.3 2,371,769 - Dsui_2230 0.86 -0.9
Or see this region's nucleotide sequence