Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2223 and Dsui_2224 are separated by 4 nucleotides Dsui_2224 and Dsui_2225 are separated by 170 nucleotides Dsui_2225 and Dsui_2226 are separated by 229 nucleotides
Dsui_2223: Dsui_2223 - putative ATP-dependent protease, at 2,363,741 to 2,366,266
_2223
Dsui_2224: Dsui_2224 - hypothetical protein, at 2,366,271 to 2,366,747
_2224
Dsui_2225: Dsui_2225 - hypothetical protein, at 2,366,918 to 2,367,067
_2225
Dsui_2226: Dsui_2226 - DNA-binding domain-containing protein, AraC-type, at 2,367,297 to 2,368,181
_2226
Position (kb)
2366
2367
2368 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2366.029 kb on + strand at 2366.176 kb on + strand at 2366.205 kb on - strand at 2366.344 kb on + strand, within Dsui_2224 at 2366.431 kb on - strand, within Dsui_2224 at 2366.632 kb on + strand, within Dsui_2224 at 2366.632 kb on + strand, within Dsui_2224 at 2366.640 kb on - strand at 2366.691 kb on - strand at 2366.741 kb on + strand at 2366.777 kb on + strand at 2366.854 kb on - strand at 2366.894 kb on - strand at 2367.117 kb on + strand at 2367.127 kb on + strand at 2367.138 kb on + strand at 2367.343 kb on + strand at 2367.491 kb on + strand, within Dsui_2226 at 2367.492 kb on + strand, within Dsui_2226 at 2367.510 kb on - strand at 2367.519 kb on + strand, within Dsui_2226 at 2367.524 kb on + strand, within Dsui_2226 at 2367.527 kb on - strand, within Dsui_2226 at 2367.527 kb on - strand, within Dsui_2226 at 2367.533 kb on - strand at 2367.629 kb on + strand, within Dsui_2226 at 2367.728 kb on - strand at 2367.748 kb on + strand at 2367.839 kb on - strand at 2367.840 kb on - strand at 2367.872 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 2,366,029 + -0.2 2,366,176 + -0.1 2,366,205 - -0.2 2,366,344 + Dsui_2224 0.15 -0.4 2,366,431 - Dsui_2224 0.34 +0.8 2,366,632 + Dsui_2224 0.76 -1.9 2,366,632 + Dsui_2224 0.76 +1.1 2,366,640 - -0.8 2,366,691 - +0.8 2,366,741 + -3.2 2,366,777 + -0.7 2,366,854 - +0.8 2,366,894 - -0.2 2,367,117 + +0.8 2,367,127 + -1.8 2,367,138 + +0.8 2,367,343 + +0.8 2,367,491 + Dsui_2226 0.22 -0.2 2,367,492 + Dsui_2226 0.22 -0.8 2,367,510 - -0.2 2,367,519 + Dsui_2226 0.25 +0.8 2,367,524 + Dsui_2226 0.26 -1.2 2,367,527 - Dsui_2226 0.26 +0.3 2,367,527 - Dsui_2226 0.26 +0.3 2,367,533 - +0.8 2,367,629 + Dsui_2226 0.38 -0.8 2,367,728 - +0.8 2,367,748 + +0.8 2,367,839 - +0.8 2,367,840 - -0.2 2,367,872 - -0.2
Or see this region's nucleotide sequence