Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2168 and Dsui_2169 are separated by 71 nucleotides Dsui_2169 and Dsui_2170 overlap by 4 nucleotides Dsui_2170 and Dsui_2171 overlap by 4 nucleotides Dsui_2171 and Dsui_2172 are separated by 37 nucleotides
Dsui_2168: Dsui_2168 - putative hydrolase of alpha/beta superfamily, at 2,305,254 to 2,306,219
_2168
Dsui_2169: Dsui_2169 - hypothetical protein, at 2,306,291 to 2,306,572
_2169
Dsui_2170: Dsui_2170 - putative iron-regulated membrane protein, at 2,306,569 to 2,308,077
_2170
Dsui_2171: Dsui_2171 - Protein of unknown function (DUF3325), at 2,308,074 to 2,308,430
_2171
Dsui_2172: Dsui_2172 - transcriptional regulator, at 2,308,468 to 2,308,944
_2172
Position (kb)
2306
2307
2308
2309 Strain fitness (log2 ratio)
-2
-1
0
1 at 2305.596 kb on - strand at 2305.687 kb on - strand at 2306.214 kb on + strand at 2306.305 kb on + strand at 2306.407 kb on - strand at 2306.500 kb on + strand at 2306.838 kb on - strand at 2306.883 kb on - strand at 2306.938 kb on + strand, within Dsui_2170 at 2306.963 kb on + strand at 2307.021 kb on + strand at 2307.091 kb on - strand at 2307.109 kb on - strand, within Dsui_2170 at 2307.109 kb on - strand at 2307.470 kb on + strand at 2307.470 kb on + strand at 2307.470 kb on + strand at 2307.532 kb on + strand at 2307.594 kb on + strand at 2307.891 kb on + strand, within Dsui_2170 at 2308.009 kb on + strand at 2308.017 kb on - strand at 2308.113 kb on - strand at 2308.129 kb on + strand, within Dsui_2171 at 2308.135 kb on + strand at 2308.392 kb on + strand at 2308.409 kb on - strand at 2308.594 kb on + strand, within Dsui_2172 at 2308.594 kb on + strand, within Dsui_2172 at 2308.849 kb on + strand, within Dsui_2172 at 2308.957 kb on + strand at 2308.970 kb on + strand at 2309.060 kb on + strand at 2309.060 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 2,305,596 - +0.9 2,305,687 - -0.1 2,306,214 + +0.9 2,306,305 + -1.5 2,306,407 - -0.7 2,306,500 + +0.9 2,306,838 - +0.9 2,306,883 - +0.9 2,306,938 + Dsui_2170 0.24 -2.0 2,306,963 + -0.1 2,307,021 + -0.1 2,307,091 - +0.9 2,307,109 - Dsui_2170 0.36 -1.1 2,307,109 - +0.9 2,307,470 + +0.9 2,307,470 + +0.9 2,307,470 + -0.7 2,307,532 + +0.9 2,307,594 + +0.9 2,307,891 + Dsui_2170 0.88 -2.5 2,308,009 + +0.9 2,308,017 - +0.9 2,308,113 - -0.1 2,308,129 + Dsui_2171 0.15 -1.5 2,308,135 + +0.9 2,308,392 + +0.9 2,308,409 - +0.9 2,308,594 + Dsui_2172 0.26 +0.0 2,308,594 + Dsui_2172 0.26 -0.5 2,308,849 + Dsui_2172 0.80 +0.1 2,308,957 + -0.9 2,308,970 + -0.6 2,309,060 + -0.1 2,309,060 + +0.9
Or see this region's nucleotide sequence