Strain Fitness in Dechlorosoma suillum PS around Dsui_2081

Experiment: ALP with Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2079 and Dsui_2080 overlap by 4 nucleotidesDsui_2080 and Dsui_2081 are separated by 6 nucleotidesDsui_2081 and Dsui_2082 are separated by 116 nucleotidesDsui_2082 and Dsui_2083 are separated by 213 nucleotides Dsui_2079: Dsui_2079 - histidine kinase, at 2,198,910 to 2,200,745 _2079 Dsui_2080: Dsui_2080 - response regulator, at 2,200,742 to 2,201,386 _2080 Dsui_2081: Dsui_2081 - transcriptional regulator with HTH domain and aminotransferase domain, at 2,201,393 to 2,202,961 _2081 Dsui_2082: Dsui_2082 - alkylhydroperoxidase AhpD family core domain protein, at 2,203,078 to 2,203,518 _2082 Dsui_2083: Dsui_2083 - hypothetical protein, at 2,203,732 to 2,204,022 _2083 Position (kb) 2201 2202 2203Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2200.495 kb on - strand, within Dsui_2079at 2200.541 kb on + strand, within Dsui_2079at 2200.546 kb on + strandat 2200.554 kb on + strand, within Dsui_2079at 2200.606 kb on + strandat 2200.608 kb on - strandat 2200.681 kb on + strandat 2200.692 kb on + strandat 2200.814 kb on - strandat 2200.827 kb on - strandat 2200.827 kb on - strand, within Dsui_2080at 2200.841 kb on + strand, within Dsui_2080at 2200.971 kb on - strand, within Dsui_2080at 2201.044 kb on + strand, within Dsui_2080at 2201.081 kb on + strand, within Dsui_2080at 2201.109 kb on - strandat 2201.228 kb on + strandat 2201.293 kb on - strand, within Dsui_2080at 2201.687 kb on - strand, within Dsui_2081at 2201.692 kb on - strand, within Dsui_2081at 2201.735 kb on - strand, within Dsui_2081at 2201.806 kb on + strandat 2201.872 kb on + strand, within Dsui_2081at 2201.916 kb on - strandat 2201.997 kb on + strand, within Dsui_2081at 2202.071 kb on + strandat 2202.083 kb on + strandat 2202.083 kb on + strand, within Dsui_2081at 2202.191 kb on - strand, within Dsui_2081at 2202.191 kb on - strand, within Dsui_2081at 2202.223 kb on + strandat 2202.231 kb on - strand, within Dsui_2081at 2202.255 kb on + strand, within Dsui_2081at 2202.290 kb on + strandat 2202.319 kb on - strand, within Dsui_2081at 2202.342 kb on - strand, within Dsui_2081at 2202.354 kb on + strand, within Dsui_2081at 2202.502 kb on + strandat 2202.507 kb on + strandat 2202.526 kb on + strandat 2202.528 kb on + strandat 2202.529 kb on - strand, within Dsui_2081at 2202.566 kb on + strandat 2202.906 kb on + strandat 2202.946 kb on - strandat 2203.009 kb on + strandat 2203.060 kb on + strandat 2203.163 kb on + strandat 2203.163 kb on + strand, within Dsui_2082at 2203.163 kb on + strand, within Dsui_2082at 2203.186 kb on + strand, within Dsui_2082at 2203.259 kb on + strand, within Dsui_2082at 2203.339 kb on + strand, within Dsui_2082at 2203.339 kb on + strand, within Dsui_2082at 2203.344 kb on + strand, within Dsui_2082at 2203.344 kb on + strandat 2203.347 kb on - strandat 2203.352 kb on - strandat 2203.397 kb on + strand, within Dsui_2082at 2203.407 kb on + strand, within Dsui_2082at 2203.407 kb on + strand, within Dsui_2082at 2203.414 kb on + strand, within Dsui_2082at 2203.419 kb on + strand, within Dsui_2082at 2203.442 kb on + strand, within Dsui_2082at 2203.442 kb on + strand, within Dsui_2082at 2203.442 kb on + strand, within Dsui_2082at 2203.442 kb on + strand, within Dsui_2082at 2203.442 kb on + strand, within Dsui_2082at 2203.482 kb on + strandat 2203.507 kb on + strandat 2203.512 kb on + strandat 2203.518 kb on + strandat 2203.545 kb on + strandat 2203.545 kb on + strandat 2203.545 kb on + strandat 2203.546 kb on + strandat 2203.553 kb on - strandat 2203.553 kb on - strandat 2203.553 kb on - strandat 2203.554 kb on - strandat 2203.554 kb on - strandat 2203.565 kb on - strandat 2203.579 kb on + strandat 2203.586 kb on + strandat 2203.594 kb on - strandat 2203.597 kb on - strandat 2203.605 kb on - strandat 2203.619 kb on + strandat 2203.619 kb on + strandat 2203.619 kb on + strandat 2203.620 kb on - strandat 2203.621 kb on + strandat 2203.622 kb on - strandat 2203.624 kb on + strandat 2203.624 kb on + strandat 2203.627 kb on - strandat 2203.632 kb on - strandat 2203.650 kb on + strandat 2203.650 kb on + strandat 2203.655 kb on - strandat 2203.660 kb on + strandat 2203.677 kb on - strandat 2203.683 kb on - strandat 2203.688 kb on + strandat 2203.702 kb on + strandat 2203.717 kb on - strandat 2203.717 kb on - strandat 2203.730 kb on + strandat 2203.731 kb on - strandat 2203.733 kb on - strandat 2203.738 kb on - strandat 2203.738 kb on - strandat 2203.739 kb on - strandat 2203.739 kb on - strandat 2203.739 kb on - strandat 2203.756 kb on - strandat 2203.775 kb on + strandat 2203.776 kb on - strand, within Dsui_2083at 2203.776 kb on - strand, within Dsui_2083at 2203.776 kb on - strand, within Dsui_2083at 2203.783 kb on - strandat 2203.786 kb on + strandat 2203.791 kb on + strandat 2203.791 kb on - strandat 2203.794 kb on - strand, within Dsui_2083at 2203.800 kb on - strandat 2203.805 kb on + strand, within Dsui_2083at 2203.808 kb on - strand, within Dsui_2083at 2203.810 kb on + strandat 2203.815 kb on + strand, within Dsui_2083at 2203.825 kb on - strand, within Dsui_2083at 2203.841 kb on + strandat 2203.842 kb on - strandat 2203.849 kb on - strand, within Dsui_2083at 2203.851 kb on + strandat 2203.851 kb on + strand, within Dsui_2083at 2203.873 kb on + strandat 2203.873 kb on + strandat 2203.890 kb on - strandat 2203.898 kb on - strandat 2203.905 kb on + strandat 2203.915 kb on + strandat 2203.928 kb on + strandat 2203.933 kb on + strand, within Dsui_2083at 2203.933 kb on + strandat 2203.945 kb on + strand, within Dsui_2083at 2203.950 kb on + strand, within Dsui_2083at 2203.950 kb on + strandat 2203.956 kb on + strand, within Dsui_2083

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM
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2,200,495 - Dsui_2079 0.86 -1.8
2,200,541 + Dsui_2079 0.89 -1.8
2,200,546 + +0.8
2,200,554 + Dsui_2079 0.90 +0.8
2,200,606 + +1.8
2,200,608 - +0.8
2,200,681 + -0.2
2,200,692 + -0.2
2,200,814 - -0.8
2,200,827 - -0.2
2,200,827 - Dsui_2080 0.13 -0.2
2,200,841 + Dsui_2080 0.15 -0.2
2,200,971 - Dsui_2080 0.36 -2.7
2,201,044 + Dsui_2080 0.47 +0.8
2,201,081 + Dsui_2080 0.53 +0.8
2,201,109 - +0.8
2,201,228 + +0.8
2,201,293 - Dsui_2080 0.85 -0.2
2,201,687 - Dsui_2081 0.19 +0.8
2,201,692 - Dsui_2081 0.19 -0.8
2,201,735 - Dsui_2081 0.22 -1.8
2,201,806 + -1.2
2,201,872 + Dsui_2081 0.31 -0.8
2,201,916 - +0.8
2,201,997 + Dsui_2081 0.38 -0.2
2,202,071 + -0.2
2,202,083 + -0.8
2,202,083 + Dsui_2081 0.44 -1.2
2,202,191 - Dsui_2081 0.51 +0.8
2,202,191 - Dsui_2081 0.51 -0.8
2,202,223 + +0.8
2,202,231 - Dsui_2081 0.53 -2.8
2,202,255 + Dsui_2081 0.55 -1.8
2,202,290 + +0.8
2,202,319 - Dsui_2081 0.59 -2.0
2,202,342 - Dsui_2081 0.60 -1.5
2,202,354 + Dsui_2081 0.61 -2.0
2,202,502 + -0.2
2,202,507 + +0.8
2,202,526 + +0.8
2,202,528 + -1.2
2,202,529 - Dsui_2081 0.72 -1.5
2,202,566 + -0.2
2,202,906 + -0.8
2,202,946 - -2.5
2,203,009 + -0.8
2,203,060 + -0.8
2,203,163 + +0.8
2,203,163 + Dsui_2082 0.19 -1.2
2,203,163 + Dsui_2082 0.19 -0.2
2,203,186 + Dsui_2082 0.24 +0.8
2,203,259 + Dsui_2082 0.41 -2.0
2,203,339 + Dsui_2082 0.59 -0.2
2,203,339 + Dsui_2082 0.59 +0.8
2,203,344 + Dsui_2082 0.60 -0.8
2,203,344 + +0.8
2,203,347 - -0.2
2,203,352 - +0.8
2,203,397 + Dsui_2082 0.72 -1.2
2,203,407 + Dsui_2082 0.75 +0.8
2,203,407 + Dsui_2082 0.75 -0.2
2,203,414 + Dsui_2082 0.76 +0.8
2,203,419 + Dsui_2082 0.77 -1.8
2,203,442 + Dsui_2082 0.83 -1.5
2,203,442 + Dsui_2082 0.83 -0.2
2,203,442 + Dsui_2082 0.83 -0.2
2,203,442 + Dsui_2082 0.83 -0.8
2,203,442 + Dsui_2082 0.83 +0.8
2,203,482 + -0.8
2,203,507 + -1.2
2,203,512 + +0.8
2,203,518 + -0.8
2,203,545 + +0.8
2,203,545 + +0.8
2,203,545 + +0.8
2,203,546 + -1.5
2,203,553 - -0.2
2,203,553 - -0.2
2,203,553 - +0.8
2,203,554 - -1.2
2,203,554 - +0.8
2,203,565 - -2.0
2,203,579 + +0.8
2,203,586 + +0.8
2,203,594 - -0.8
2,203,597 - +0.8
2,203,605 - -1.2
2,203,619 + -0.2
2,203,619 + +0.8
2,203,619 + +0.8
2,203,620 - -0.2
2,203,621 + +0.8
2,203,622 - +0.8
2,203,624 + -0.8
2,203,624 + +0.8
2,203,627 - +0.8
2,203,632 - +0.8
2,203,650 + +0.8
2,203,650 + -0.2
2,203,655 - +0.8
2,203,660 + -0.2
2,203,677 - +0.8
2,203,683 - -0.2
2,203,688 + +0.8
2,203,702 + +0.8
2,203,717 - +0.8
2,203,717 - -0.2
2,203,730 + -0.8
2,203,731 - +0.8
2,203,733 - -0.2
2,203,738 - -0.8
2,203,738 - -1.2
2,203,739 - +0.8
2,203,739 - -0.2
2,203,739 - -0.8
2,203,756 - -0.2
2,203,775 + -0.2
2,203,776 - Dsui_2083 0.15 -0.1
2,203,776 - Dsui_2083 0.15 -1.4
2,203,776 - Dsui_2083 0.15 +0.3
2,203,783 - +0.8
2,203,786 + -0.2
2,203,791 + +0.8
2,203,791 - +0.8
2,203,794 - Dsui_2083 0.21 -0.2
2,203,800 - +0.8
2,203,805 + Dsui_2083 0.25 +0.8
2,203,808 - Dsui_2083 0.26 -0.8
2,203,810 + -0.8
2,203,815 + Dsui_2083 0.29 -1.2
2,203,825 - Dsui_2083 0.32 +0.8
2,203,841 + +0.8
2,203,842 - -0.2
2,203,849 - Dsui_2083 0.40 +0.1
2,203,851 + -1.2
2,203,851 + Dsui_2083 0.41 -0.8
2,203,873 + +0.8
2,203,873 + +0.8
2,203,890 - +0.8
2,203,898 - -0.2
2,203,905 + -0.2
2,203,915 + +0.8
2,203,928 + +0.8
2,203,933 + Dsui_2083 0.69 -0.8
2,203,933 + -0.2
2,203,945 + Dsui_2083 0.73 +0.8
2,203,950 + Dsui_2083 0.75 +0.8
2,203,950 + +0.8
2,203,956 + Dsui_2083 0.77 -0.8

Or see this region's nucleotide sequence