Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1986 and Dsui_1987 are separated by 24 nucleotides Dsui_1987 and Dsui_1988 are separated by 105 nucleotides Dsui_1988 and Dsui_1989 are separated by 135 nucleotides Dsui_1989 and Dsui_1990 are separated by 73 nucleotides Dsui_1990 and Dsui_1991 overlap by 35 nucleotides
Dsui_1986: Dsui_1986 - sulfite reductase, beta subunit (hemoprotein), at 2,094,974 to 2,096,650
_1986
Dsui_1987: Dsui_1987 - putative permease, at 2,096,675 to 2,097,448
_1987
Dsui_1988: Dsui_1988 - transcriptional regulator, at 2,097,554 to 2,098,528
_1988
Dsui_1989: Dsui_1989 - ribosomal protein S6, at 2,098,664 to 2,099,047
_1989
Dsui_1990: Dsui_1990 - primosomal replication protein N, at 2,099,121 to 2,099,411
_1990
Dsui_1991: Dsui_1991 - ribosomal protein S18, at 2,099,377 to 2,099,655
_1991
Position (kb)
2097
2098
2099 Strain fitness (log2 ratio)
-1
0
1 at 2096.707 kb on - strand at 2096.785 kb on + strand at 2096.785 kb on + strand at 2096.871 kb on - strand, within Dsui_1987 at 2096.925 kb on - strand, within Dsui_1987 at 2096.925 kb on - strand, within Dsui_1987 at 2096.997 kb on - strand, within Dsui_1987 at 2096.997 kb on - strand, within Dsui_1987 at 2097.003 kb on - strand, within Dsui_1987 at 2097.063 kb on + strand at 2097.063 kb on + strand at 2097.069 kb on - strand, within Dsui_1987 at 2097.071 kb on - strand, within Dsui_1987 at 2097.191 kb on - strand, within Dsui_1987 at 2097.192 kb on - strand, within Dsui_1987 at 2097.276 kb on - strand, within Dsui_1987 at 2097.308 kb on - strand, within Dsui_1987 at 2097.325 kb on - strand, within Dsui_1987 at 2097.441 kb on - strand at 2098.522 kb on + strand at 2098.522 kb on + strand at 2098.522 kb on + strand at 2098.522 kb on + strand at 2098.522 kb on + strand at 2098.530 kb on - strand at 2098.530 kb on - strand at 2098.530 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 2,096,707 - +0.2 2,096,785 + +0.9 2,096,785 + +0.9 2,096,871 - Dsui_1987 0.25 -0.1 2,096,925 - Dsui_1987 0.32 +0.3 2,096,925 - Dsui_1987 0.32 +0.2 2,096,997 - Dsui_1987 0.42 +0.3 2,096,997 - Dsui_1987 0.42 +0.4 2,097,003 - Dsui_1987 0.42 +0.2 2,097,063 + -0.6 2,097,063 + +0.9 2,097,069 - Dsui_1987 0.51 -0.3 2,097,071 - Dsui_1987 0.51 +0.9 2,097,191 - Dsui_1987 0.67 +0.2 2,097,192 - Dsui_1987 0.67 +0.4 2,097,276 - Dsui_1987 0.78 +0.2 2,097,308 - Dsui_1987 0.82 +0.2 2,097,325 - Dsui_1987 0.84 +0.3 2,097,441 - +0.5 2,098,522 + -0.6 2,098,522 + -0.2 2,098,522 + -0.0 2,098,522 + -0.2 2,098,522 + -0.1 2,098,530 - +0.9 2,098,530 - -1.4 2,098,530 - -0.1
Or see this region's nucleotide sequence