Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1851 and Dsui_1852 are separated by 3 nucleotides Dsui_1852 and Dsui_1853 are separated by 215 nucleotides Dsui_1853 and Dsui_1854 are separated by 1 nucleotides
Dsui_1851: Dsui_1851 - signal transduction histidine kinase, at 1,945,413 to 1,946,837
_1851
Dsui_1852: Dsui_1852 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 1,946,841 to 1,947,530
_1852
Dsui_1853: Dsui_1853 - P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein, at 1,947,746 to 1,948,312
_1853
Dsui_1854: Dsui_1854 - hypothetical protein, at 1,948,314 to 1,949,579
_1854
Position (kb)
1946
1947
1948 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1945.922 kb on - strand, within Dsui_1851 at 1945.955 kb on + strand at 1946.037 kb on + strand at 1946.077 kb on + strand at 1946.095 kb on - strand, within Dsui_1851 at 1946.267 kb on - strand, within Dsui_1851 at 1946.316 kb on + strand at 1946.317 kb on + strand, within Dsui_1851 at 1946.340 kb on - strand, within Dsui_1851 at 1946.527 kb on + strand, within Dsui_1851 at 1946.575 kb on + strand, within Dsui_1851 at 1946.839 kb on + strand at 1946.917 kb on - strand at 1946.996 kb on + strand at 1947.005 kb on + strand, within Dsui_1852 at 1947.030 kb on + strand, within Dsui_1852 at 1947.188 kb on - strand, within Dsui_1852 at 1947.262 kb on - strand, within Dsui_1852 at 1947.561 kb on + strand at 1947.617 kb on + strand at 1947.617 kb on + strand at 1947.617 kb on + strand at 1947.625 kb on - strand at 1947.625 kb on - strand at 1947.625 kb on - strand at 1947.625 kb on - strand at 1947.644 kb on - strand at 1947.697 kb on + strand at 1947.783 kb on + strand at 1947.928 kb on + strand, within Dsui_1853 at 1947.929 kb on + strand, within Dsui_1853 at 1947.960 kb on + strand at 1948.009 kb on + strand at 1948.044 kb on - strand at 1948.111 kb on + strand at 1948.120 kb on - strand, within Dsui_1853 at 1948.130 kb on - strand at 1948.375 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 1,945,922 - Dsui_1851 0.36 -2.2 1,945,955 + +0.6 1,946,037 + +0.6 1,946,077 + -1.4 1,946,095 - Dsui_1851 0.48 -0.4 1,946,267 - Dsui_1851 0.60 -2.2 1,946,316 + +0.6 1,946,317 + Dsui_1851 0.63 +0.6 1,946,340 - Dsui_1851 0.65 -1.7 1,946,527 + Dsui_1851 0.78 -2.0 1,946,575 + Dsui_1851 0.82 +0.6 1,946,839 + -1.7 1,946,917 - -1.4 1,946,996 + +0.6 1,947,005 + Dsui_1852 0.24 -3.0 1,947,030 + Dsui_1852 0.27 -1.0 1,947,188 - Dsui_1852 0.50 +0.6 1,947,262 - Dsui_1852 0.61 -1.0 1,947,561 + -0.4 1,947,617 + +0.6 1,947,617 + -0.4 1,947,617 + +0.6 1,947,625 - +0.6 1,947,625 - -0.4 1,947,625 - -1.0 1,947,625 - -1.4 1,947,644 - -0.4 1,947,697 + -1.0 1,947,783 + -2.8 1,947,928 + Dsui_1853 0.32 -2.7 1,947,929 + Dsui_1853 0.32 -1.7 1,947,960 + +0.6 1,948,009 + +0.6 1,948,044 - -0.4 1,948,111 + +0.6 1,948,120 - Dsui_1853 0.66 -1.4 1,948,130 - -1.4 1,948,375 + +0.6
Or see this region's nucleotide sequence