Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1828 and Dsui_1829 are separated by 122 nucleotides Dsui_1829 and Dsui_1830 are separated by 45 nucleotides Dsui_1830 and Dsui_1831 are separated by 520 nucleotides
Dsui_1828: Dsui_1828 - response regulator with putative antiterminator output domain, at 1,927,566 to 1,928,141
_1828
Dsui_1829: Dsui_1829 - hemerythrin HHE cation binding domain-containing protein, at 1,928,264 to 1,928,659
_1829
Dsui_1830: Dsui_1830 - Yip1 domain protein, at 1,928,705 to 1,929,304
_1830
Dsui_1831: Dsui_1831 - ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component, at 1,929,825 to 1,931,102
_1831
Position (kb)
1928
1929
1930 Strain fitness (log2 ratio)
-2
-1
0
1 at 1927.732 kb on + strand, within Dsui_1828 at 1927.873 kb on + strand, within Dsui_1828 at 1927.881 kb on - strand, within Dsui_1828 at 1927.941 kb on - strand, within Dsui_1828 at 1927.941 kb on - strand, within Dsui_1828 at 1928.008 kb on - strand, within Dsui_1828 at 1928.008 kb on - strand at 1928.008 kb on - strand, within Dsui_1828 at 1928.047 kb on - strand at 1928.055 kb on + strand, within Dsui_1828 at 1928.167 kb on + strand at 1928.238 kb on + strand at 1928.247 kb on - strand at 1928.313 kb on + strand, within Dsui_1829 at 1928.502 kb on - strand, within Dsui_1829 at 1928.574 kb on + strand, within Dsui_1829 at 1928.579 kb on + strand, within Dsui_1829 at 1928.579 kb on + strand, within Dsui_1829 at 1928.710 kb on - strand at 1928.758 kb on + strand at 1928.843 kb on + strand, within Dsui_1830 at 1928.929 kb on + strand, within Dsui_1830 at 1928.931 kb on - strand, within Dsui_1830 at 1929.010 kb on - strand at 1929.232 kb on - strand, within Dsui_1830 at 1929.274 kb on + strand at 1929.292 kb on + strand at 1929.347 kb on + strand at 1929.501 kb on + strand at 1929.516 kb on + strand at 1929.550 kb on + strand at 1929.648 kb on + strand at 1929.685 kb on + strand at 1929.713 kb on - strand at 1929.720 kb on + strand at 1929.728 kb on - strand at 1929.728 kb on - strand at 1929.809 kb on + strand at 1930.165 kb on + strand, within Dsui_1831 at 1930.169 kb on + strand, within Dsui_1831 at 1930.169 kb on + strand at 1930.248 kb on + strand, within Dsui_1831 at 1930.248 kb on + strand, within Dsui_1831 at 1930.274 kb on + strand, within Dsui_1831 at 1930.274 kb on + strand, within Dsui_1831 at 1930.299 kb on + strand, within Dsui_1831 at 1930.304 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 1,927,732 + Dsui_1828 0.29 -0.2 1,927,873 + Dsui_1828 0.53 -0.2 1,927,881 - Dsui_1828 0.55 +0.6 1,927,941 - Dsui_1828 0.65 -1.0 1,927,941 - Dsui_1828 0.65 -0.4 1,928,008 - Dsui_1828 0.77 -0.4 1,928,008 - +0.6 1,928,008 - Dsui_1828 0.77 +0.6 1,928,047 - +0.6 1,928,055 + Dsui_1828 0.85 -0.8 1,928,167 + -0.2 1,928,238 + -0.4 1,928,247 - -0.4 1,928,313 + Dsui_1829 0.12 -0.7 1,928,502 - Dsui_1829 0.60 -1.4 1,928,574 + Dsui_1829 0.78 -0.9 1,928,579 + Dsui_1829 0.80 -1.0 1,928,579 + Dsui_1829 0.80 -0.0 1,928,710 - +0.6 1,928,758 + -0.4 1,928,843 + Dsui_1830 0.23 +0.6 1,928,929 + Dsui_1830 0.37 -0.4 1,928,931 - Dsui_1830 0.38 -1.0 1,929,010 - +0.6 1,929,232 - Dsui_1830 0.88 -1.0 1,929,274 + +0.6 1,929,292 + +0.6 1,929,347 + -1.4 1,929,501 + -0.4 1,929,516 + -0.4 1,929,550 + +0.6 1,929,648 + +0.6 1,929,685 + +0.6 1,929,713 - -1.4 1,929,720 + -1.4 1,929,728 - +0.6 1,929,728 - -0.4 1,929,809 + -1.0 1,930,165 + Dsui_1831 0.27 -1.0 1,930,169 + Dsui_1831 0.27 -0.0 1,930,169 + -0.5 1,930,248 + Dsui_1831 0.33 -2.6 1,930,248 + Dsui_1831 0.33 +0.5 1,930,274 + Dsui_1831 0.35 +0.5 1,930,274 + Dsui_1831 0.35 -2.3 1,930,299 + Dsui_1831 0.37 -1.0 1,930,304 + +0.5
Or see this region's nucleotide sequence