Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1801 and Dsui_1802 are separated by 121 nucleotides Dsui_1802 and Dsui_1803 are separated by 163 nucleotides Dsui_1803 and Dsui_1804 are separated by 237 nucleotides Dsui_1804 and Dsui_1805 are separated by 14 nucleotides Dsui_1805 and Dsui_1806 are separated by 228 nucleotides
Dsui_1801: Dsui_1801 - ATPase involved in chromosome partitioning, at 1,900,405 to 1,901,022
_1801
Dsui_1802: Dsui_1802 - tRNA-Met, at 1,901,144 to 1,901,220
_1802
Dsui_1803: Dsui_1803 - 16S ribosomal RNA, at 1,901,384 to 1,902,805
_1803
Dsui_1804: Dsui_1804 - tRNA-Ile, at 1,903,043 to 1,903,119
_1804
Dsui_1805: Dsui_1805 - tRNA-Ala, at 1,903,134 to 1,903,209
_1805
Dsui_1806: Dsui_1806 - 23S ribosomal RNA, at 1,903,438 to 1,906,319
_1806
Position (kb)
1901
1902
1903 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1900.396 kb on + strand at 1900.396 kb on + strand at 1900.399 kb on - strand at 1900.409 kb on + strand at 1900.428 kb on + strand at 1900.439 kb on + strand at 1900.456 kb on - strand at 1900.486 kb on + strand, within Dsui_1801 at 1900.486 kb on + strand, within Dsui_1801 at 1900.499 kb on + strand, within Dsui_1801 at 1900.499 kb on + strand, within Dsui_1801 at 1900.499 kb on + strand, within Dsui_1801 at 1900.499 kb on + strand, within Dsui_1801 at 1900.499 kb on + strand, within Dsui_1801 at 1900.499 kb on + strand, within Dsui_1801 at 1900.544 kb on + strand, within Dsui_1801 at 1900.573 kb on + strand, within Dsui_1801 at 1900.660 kb on + strand, within Dsui_1801 at 1900.667 kb on + strand, within Dsui_1801 at 1900.667 kb on + strand, within Dsui_1801 at 1900.667 kb on + strand, within Dsui_1801 at 1900.667 kb on + strand, within Dsui_1801 at 1900.667 kb on + strand, within Dsui_1801 at 1900.675 kb on - strand, within Dsui_1801 at 1900.675 kb on - strand, within Dsui_1801 at 1900.685 kb on + strand, within Dsui_1801 at 1900.704 kb on + strand, within Dsui_1801 at 1900.705 kb on - strand, within Dsui_1801 at 1900.761 kb on - strand, within Dsui_1801 at 1900.899 kb on + strand, within Dsui_1801 at 1900.906 kb on + strand, within Dsui_1801 at 1900.906 kb on + strand, within Dsui_1801 at 1900.914 kb on - strand, within Dsui_1801 at 1900.914 kb on - strand, within Dsui_1801 at 1900.914 kb on - strand, within Dsui_1801 at 1900.914 kb on - strand, within Dsui_1801 at 1900.916 kb on + strand, within Dsui_1801 at 1900.916 kb on + strand, within Dsui_1801 at 1900.923 kb on + strand, within Dsui_1801 at 1900.968 kb on + strand at 1900.979 kb on + strand at 1901.019 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 1,900,396 + +0.5 1,900,396 + -2.1 1,900,399 - +0.5 1,900,409 + +0.5 1,900,428 + -0.5 1,900,439 + -0.5 1,900,456 - +0.5 1,900,486 + Dsui_1801 0.13 +0.5 1,900,486 + Dsui_1801 0.13 -0.5 1,900,499 + Dsui_1801 0.15 +0.5 1,900,499 + Dsui_1801 0.15 -1.8 1,900,499 + Dsui_1801 0.15 -2.8 1,900,499 + Dsui_1801 0.15 -0.5 1,900,499 + Dsui_1801 0.15 +0.5 1,900,499 + Dsui_1801 0.15 -1.5 1,900,544 + Dsui_1801 0.22 -0.5 1,900,573 + Dsui_1801 0.27 +0.5 1,900,660 + Dsui_1801 0.41 -2.7 1,900,667 + Dsui_1801 0.42 +0.5 1,900,667 + Dsui_1801 0.42 -0.5 1,900,667 + Dsui_1801 0.42 -1.5 1,900,667 + Dsui_1801 0.42 -0.2 1,900,667 + Dsui_1801 0.42 -1.1 1,900,675 - Dsui_1801 0.44 +0.5 1,900,675 - Dsui_1801 0.44 +0.5 1,900,685 + Dsui_1801 0.45 -0.5 1,900,704 + Dsui_1801 0.48 +0.5 1,900,705 - Dsui_1801 0.49 -0.5 1,900,761 - Dsui_1801 0.58 +0.5 1,900,899 + Dsui_1801 0.80 -0.5 1,900,906 + Dsui_1801 0.81 +0.5 1,900,906 + Dsui_1801 0.81 -2.1 1,900,914 - Dsui_1801 0.82 +0.5 1,900,914 - Dsui_1801 0.82 +0.5 1,900,914 - Dsui_1801 0.82 -1.1 1,900,914 - Dsui_1801 0.82 -0.5 1,900,916 + Dsui_1801 0.83 +0.5 1,900,916 + Dsui_1801 0.83 +0.5 1,900,923 + Dsui_1801 0.84 -1.1 1,900,968 + -0.5 1,900,979 + -0.5 1,901,019 - +0.5
Or see this region's nucleotide sequence