Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1796 and Dsui_1797 are separated by 77 nucleotides Dsui_1797 and Dsui_1798 are separated by 29 nucleotides
Dsui_1796: Dsui_1796 - phage/plasmid-related protein TIGR03299, at 1,895,646 to 1,896,614
_1796
Dsui_1797: Dsui_1797 - putative phage-type endonuclease, at 1,896,692 to 1,897,264
_1797
Dsui_1798: Dsui_1798 - DNA replication protein, at 1,897,294 to 1,898,028
_1798
Position (kb)
1897
1898
1899 Strain fitness (log2 ratio)
-2
-1
0
1 at 1896.336 kb on - strand, within Dsui_1796 at 1896.404 kb on + strand, within Dsui_1796 at 1896.422 kb on - strand, within Dsui_1796 at 1896.423 kb on + strand at 1896.484 kb on - strand at 1896.484 kb on - strand, within Dsui_1796 at 1896.587 kb on - strand at 1896.594 kb on + strand at 1896.600 kb on - strand at 1896.657 kb on - strand at 1896.669 kb on + strand at 1896.714 kb on - strand at 1896.722 kb on + strand at 1896.736 kb on - strand at 1896.774 kb on - strand, within Dsui_1797 at 1896.801 kb on + strand at 1896.825 kb on - strand at 1896.834 kb on + strand at 1896.842 kb on - strand, within Dsui_1797 at 1896.898 kb on + strand, within Dsui_1797 at 1896.906 kb on - strand, within Dsui_1797 at 1896.937 kb on + strand at 1896.947 kb on - strand, within Dsui_1797 at 1896.948 kb on + strand, within Dsui_1797 at 1896.983 kb on - strand, within Dsui_1797 at 1897.014 kb on - strand, within Dsui_1797 at 1897.042 kb on + strand at 1897.050 kb on - strand, within Dsui_1797 at 1897.099 kb on - strand, within Dsui_1797 at 1897.136 kb on - strand, within Dsui_1797 at 1897.233 kb on + strand at 1897.241 kb on - strand at 1897.266 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 1,896,336 - Dsui_1796 0.71 -0.5 1,896,404 + Dsui_1796 0.78 -1.8 1,896,422 - Dsui_1796 0.80 +0.5 1,896,423 + +0.5 1,896,484 - +0.5 1,896,484 - Dsui_1796 0.86 -0.5 1,896,587 - +0.5 1,896,594 + -0.5 1,896,600 - +0.5 1,896,657 - +0.5 1,896,669 + -0.5 1,896,714 - -1.1 1,896,722 + -1.5 1,896,736 - -0.5 1,896,774 - Dsui_1797 0.14 -0.5 1,896,801 + +0.5 1,896,825 - +0.5 1,896,834 + +0.5 1,896,842 - Dsui_1797 0.26 +0.5 1,896,898 + Dsui_1797 0.36 +0.5 1,896,906 - Dsui_1797 0.37 -0.5 1,896,937 + +0.5 1,896,947 - Dsui_1797 0.45 +0.5 1,896,948 + Dsui_1797 0.45 -2.1 1,896,983 - Dsui_1797 0.51 +0.5 1,897,014 - Dsui_1797 0.56 -0.5 1,897,042 + +0.5 1,897,050 - Dsui_1797 0.62 -0.5 1,897,099 - Dsui_1797 0.71 -1.8 1,897,136 - Dsui_1797 0.77 +0.5 1,897,233 + -1.1 1,897,241 - -1.1 1,897,266 - -0.5
Or see this region's nucleotide sequence