Strain Fitness in Dechlorosoma suillum PS around Dsui_1730

Experiment: ALP with Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1728 and Dsui_1729 are separated by 75 nucleotidesDsui_1729 and Dsui_1730 are separated by 37 nucleotidesDsui_1730 and Dsui_1731 are separated by 108 nucleotidesDsui_1731 and Dsui_1732 are separated by 171 nucleotides Dsui_1728: Dsui_1728 - flagellar motor protein, at 1,819,246 to 1,820,097 _1728 Dsui_1729: Dsui_1729 - flagellar biosynthesis/type III secretory pathway chaperone, at 1,820,173 to 1,820,640 _1729 Dsui_1730: Dsui_1730 - flagellar biosynthesis anti-sigma factor FlgM, at 1,820,678 to 1,820,968 _1730 Dsui_1731: Dsui_1731 - flagella basal body P-ring formation protein FlgA, at 1,821,077 to 1,821,796 _1731 Dsui_1732: Dsui_1732 - flagellar basal-body rod protein FlgB, at 1,821,968 to 1,822,381 _1732 Position (kb) 1820 1821Strain fitness (log2 ratio) -3 -2 -1 0 1at 1819.678 kb on + strand, within Dsui_1728at 1819.686 kb on - strand, within Dsui_1728at 1819.761 kb on - strand, within Dsui_1728at 1819.814 kb on + strand, within Dsui_1728at 1819.839 kb on - strand, within Dsui_1728at 1819.841 kb on + strand, within Dsui_1728at 1819.846 kb on + strand, within Dsui_1728at 1819.959 kb on - strand, within Dsui_1728at 1820.103 kb on + strandat 1820.110 kb on - strandat 1820.186 kb on + strandat 1820.235 kb on - strand, within Dsui_1729at 1820.239 kb on + strand, within Dsui_1729at 1820.247 kb on - strand, within Dsui_1729at 1820.247 kb on - strand, within Dsui_1729at 1820.286 kb on + strand, within Dsui_1729at 1820.341 kb on + strand, within Dsui_1729at 1820.358 kb on + strand, within Dsui_1729at 1820.455 kb on + strand, within Dsui_1729at 1820.467 kb on + strand, within Dsui_1729at 1820.676 kb on + strandat 1820.684 kb on - strandat 1820.777 kb on - strand, within Dsui_1730at 1820.777 kb on - strand, within Dsui_1730at 1820.814 kb on + strand, within Dsui_1730at 1820.894 kb on - strand, within Dsui_1730at 1820.992 kb on - strandat 1821.008 kb on + strandat 1821.008 kb on + strandat 1821.016 kb on - strandat 1821.084 kb on - strandat 1821.236 kb on + strand, within Dsui_1731at 1821.244 kb on - strand, within Dsui_1731at 1821.385 kb on + strand, within Dsui_1731at 1821.405 kb on - strand, within Dsui_1731at 1821.446 kb on + strand, within Dsui_1731at 1821.475 kb on + strand, within Dsui_1731at 1821.493 kb on - strand, within Dsui_1731at 1821.516 kb on - strand, within Dsui_1731at 1821.589 kb on + strand, within Dsui_1731at 1821.614 kb on - strand, within Dsui_1731at 1821.615 kb on - strand, within Dsui_1731at 1821.639 kb on + strand, within Dsui_1731at 1821.639 kb on + strand, within Dsui_1731at 1821.639 kb on + strand, within Dsui_1731at 1821.647 kb on - strand, within Dsui_1731at 1821.674 kb on + strand, within Dsui_1731at 1821.685 kb on - strand, within Dsui_1731at 1821.697 kb on + strand, within Dsui_1731at 1821.705 kb on - strand, within Dsui_1731at 1821.710 kb on + strand, within Dsui_1731at 1821.710 kb on + strand, within Dsui_1731at 1821.712 kb on - strand, within Dsui_1731at 1821.717 kb on - strand, within Dsui_1731at 1821.751 kb on + strandat 1821.751 kb on + strandat 1821.751 kb on + strandat 1821.751 kb on + strandat 1821.758 kb on + strandat 1821.759 kb on - strandat 1821.759 kb on - strandat 1821.759 kb on - strandat 1821.759 kb on - strandat 1821.759 kb on - strandat 1821.759 kb on - strandat 1821.763 kb on + strandat 1821.777 kb on - strandat 1821.794 kb on - strandat 1821.829 kb on + strandat 1821.856 kb on + strandat 1821.864 kb on - strandat 1821.901 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM
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1,819,678 + Dsui_1728 0.51 -0.1
1,819,686 - Dsui_1728 0.52 -0.6
1,819,761 - Dsui_1728 0.60 -1.5
1,819,814 + Dsui_1728 0.67 +0.2
1,819,839 - Dsui_1728 0.70 -0.9
1,819,841 + Dsui_1728 0.70 -0.2
1,819,846 + Dsui_1728 0.70 -0.1
1,819,959 - Dsui_1728 0.84 +0.3
1,820,103 + -0.2
1,820,110 - -0.7
1,820,186 + -0.4
1,820,235 - Dsui_1729 0.13 -0.3
1,820,239 + Dsui_1729 0.14 +0.0
1,820,247 - Dsui_1729 0.16 +0.1
1,820,247 - Dsui_1729 0.16 -0.3
1,820,286 + Dsui_1729 0.24 -0.2
1,820,341 + Dsui_1729 0.36 -0.3
1,820,358 + Dsui_1729 0.40 -0.5
1,820,455 + Dsui_1729 0.60 -0.9
1,820,467 + Dsui_1729 0.63 -0.0
1,820,676 + -0.2
1,820,684 - -0.5
1,820,777 - Dsui_1730 0.34 -1.7
1,820,777 - Dsui_1730 0.34 -2.8
1,820,814 + Dsui_1730 0.47 -1.1
1,820,894 - Dsui_1730 0.74 -0.2
1,820,992 - -0.0
1,821,008 + +0.4
1,821,008 + -1.1
1,821,016 - +0.3
1,821,084 - -0.4
1,821,236 + Dsui_1731 0.22 +0.4
1,821,244 - Dsui_1731 0.23 -0.5
1,821,385 + Dsui_1731 0.43 +0.4
1,821,405 - Dsui_1731 0.46 -0.3
1,821,446 + Dsui_1731 0.51 -1.9
1,821,475 + Dsui_1731 0.55 -2.1
1,821,493 - Dsui_1731 0.58 -0.1
1,821,516 - Dsui_1731 0.61 -0.4
1,821,589 + Dsui_1731 0.71 -1.6
1,821,614 - Dsui_1731 0.75 -0.4
1,821,615 - Dsui_1731 0.75 -0.4
1,821,639 + Dsui_1731 0.78 +0.4
1,821,639 + Dsui_1731 0.78 +0.4
1,821,639 + Dsui_1731 0.78 -1.1
1,821,647 - Dsui_1731 0.79 -0.2
1,821,674 + Dsui_1731 0.83 +0.4
1,821,685 - Dsui_1731 0.84 -0.1
1,821,697 + Dsui_1731 0.86 +0.4
1,821,705 - Dsui_1731 0.87 -0.7
1,821,710 + Dsui_1731 0.88 +0.4
1,821,710 + Dsui_1731 0.88 -0.8
1,821,712 - Dsui_1731 0.88 -0.0
1,821,717 - Dsui_1731 0.89 -0.6
1,821,751 + -1.6
1,821,751 + -1.1
1,821,751 + +0.4
1,821,751 + -1.9
1,821,758 + -0.6
1,821,759 - +0.4
1,821,759 - -0.4
1,821,759 - -1.0
1,821,759 - -0.7
1,821,759 - -0.3
1,821,759 - -1.3
1,821,763 + +0.4
1,821,777 - -0.5
1,821,794 - -0.2
1,821,829 + -0.6
1,821,856 + -2.4
1,821,864 - -0.6
1,821,901 + +0.4

Or see this region's nucleotide sequence