Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1351 and Dsui_1352 are separated by 83 nucleotides Dsui_1352 and Dsui_1353 are separated by 324 nucleotides Dsui_1353 and Dsui_1354 overlap by 4 nucleotides
Dsui_1351: Dsui_1351 - DNA/RNA helicase, superfamily II, at 1,406,162 to 1,408,087
_1351
Dsui_1352: Dsui_1352 - acyl dehydratase, at 1,408,171 to 1,408,602
_1352
Dsui_1353: Dsui_1353 - flagellar capping protein, at 1,408,927 to 1,409,817
_1353
Dsui_1354: Dsui_1354 - transcriptional regulator with HTH domain and aminotransferase domain, at 1,409,814 to 1,411,253
_1354
Position (kb)
1408
1409
1410 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1407.976 kb on - strand at 1408.088 kb on + strand at 1408.328 kb on + strand, within Dsui_1352 at 1408.361 kb on - strand, within Dsui_1352 at 1408.479 kb on + strand, within Dsui_1352 at 1408.481 kb on + strand, within Dsui_1352 at 1408.487 kb on - strand, within Dsui_1352 at 1408.489 kb on - strand, within Dsui_1352 at 1408.569 kb on + strand at 1408.675 kb on + strand at 1408.836 kb on + strand at 1408.921 kb on + strand at 1409.000 kb on + strand at 1409.008 kb on - strand at 1409.103 kb on + strand, within Dsui_1353 at 1409.139 kb on + strand at 1409.156 kb on + strand, within Dsui_1353 at 1409.230 kb on - strand, within Dsui_1353 at 1409.273 kb on + strand, within Dsui_1353 at 1409.278 kb on + strand, within Dsui_1353 at 1409.286 kb on - strand, within Dsui_1353 at 1409.297 kb on - strand at 1409.388 kb on + strand, within Dsui_1353 at 1409.438 kb on + strand, within Dsui_1353 at 1409.539 kb on + strand, within Dsui_1353 at 1409.610 kb on + strand, within Dsui_1353 at 1409.610 kb on - strand, within Dsui_1353 at 1409.610 kb on - strand, within Dsui_1353 at 1409.649 kb on - strand, within Dsui_1353 at 1409.684 kb on + strand, within Dsui_1353 at 1409.756 kb on + strand at 1409.819 kb on - strand at 1409.894 kb on + strand at 1409.920 kb on + strand at 1409.925 kb on + strand at 1409.949 kb on + strand at 1409.970 kb on - strand, within Dsui_1354 at 1410.012 kb on + strand, within Dsui_1354 at 1410.025 kb on + strand, within Dsui_1354 at 1410.028 kb on - strand, within Dsui_1354 at 1410.031 kb on + strand, within Dsui_1354 at 1410.031 kb on + strand, within Dsui_1354 at 1410.090 kb on - strand, within Dsui_1354 at 1410.093 kb on - strand, within Dsui_1354 at 1410.131 kb on + strand, within Dsui_1354 at 1410.148 kb on - strand, within Dsui_1354 at 1410.255 kb on - strand, within Dsui_1354 at 1410.320 kb on + strand, within Dsui_1354 at 1410.365 kb on - strand, within Dsui_1354 at 1410.548 kb on + strand, within Dsui_1354 at 1410.556 kb on - strand, within Dsui_1354 at 1410.587 kb on + strand, within Dsui_1354 at 1410.587 kb on + strand at 1410.595 kb on - strand, within Dsui_1354 at 1410.595 kb on - strand, within Dsui_1354 at 1410.682 kb on - strand, within Dsui_1354 at 1410.707 kb on - strand, within Dsui_1354 at 1410.757 kb on - strand, within Dsui_1354
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 1,407,976 - -0.8 1,408,088 + -0.5 1,408,328 + Dsui_1352 0.36 +0.2 1,408,361 - Dsui_1352 0.44 -2.3 1,408,479 + Dsui_1352 0.71 -1.3 1,408,481 + Dsui_1352 0.72 -1.3 1,408,487 - Dsui_1352 0.73 -1.8 1,408,489 - Dsui_1352 0.74 -0.3 1,408,569 + -0.8 1,408,675 + -2.1 1,408,836 + -1.3 1,408,921 + -1.3 1,409,000 + -2.3 1,409,008 - -1.3 1,409,103 + Dsui_1353 0.20 -1.8 1,409,139 + +0.2 1,409,156 + Dsui_1353 0.26 -2.1 1,409,230 - Dsui_1353 0.34 -2.1 1,409,273 + Dsui_1353 0.39 +0.2 1,409,278 + Dsui_1353 0.39 -1.3 1,409,286 - Dsui_1353 0.40 -0.8 1,409,297 - +0.2 1,409,388 + Dsui_1353 0.52 -2.1 1,409,438 + Dsui_1353 0.57 +0.2 1,409,539 + Dsui_1353 0.69 -2.6 1,409,610 + Dsui_1353 0.77 -0.8 1,409,610 - Dsui_1353 0.77 -0.8 1,409,610 - Dsui_1353 0.77 -0.8 1,409,649 - Dsui_1353 0.81 +0.2 1,409,684 + Dsui_1353 0.85 -1.8 1,409,756 + +0.2 1,409,819 - -1.3 1,409,894 + -0.8 1,409,920 + -1.3 1,409,925 + -1.8 1,409,949 + -0.8 1,409,970 - Dsui_1354 0.11 -1.2 1,410,012 + Dsui_1354 0.14 -1.8 1,410,025 + Dsui_1354 0.15 -1.3 1,410,028 - Dsui_1354 0.15 -1.2 1,410,031 + Dsui_1354 0.15 -0.8 1,410,031 + Dsui_1354 0.15 -2.8 1,410,090 - Dsui_1354 0.19 -2.5 1,410,093 - Dsui_1354 0.19 -2.1 1,410,131 + Dsui_1354 0.22 -0.8 1,410,148 - Dsui_1354 0.23 -0.4 1,410,255 - Dsui_1354 0.31 -0.5 1,410,320 + Dsui_1354 0.35 -0.8 1,410,365 - Dsui_1354 0.38 -0.4 1,410,548 + Dsui_1354 0.51 -0.8 1,410,556 - Dsui_1354 0.52 -0.7 1,410,587 + Dsui_1354 0.54 -0.8 1,410,587 + +0.2 1,410,595 - Dsui_1354 0.54 -2.0 1,410,595 - Dsui_1354 0.54 -1.9 1,410,682 - Dsui_1354 0.60 -0.8 1,410,707 - Dsui_1354 0.62 -1.2 1,410,757 - Dsui_1354 0.65 -0.5
Or see this region's nucleotide sequence