Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1225 and Dsui_1226 are separated by 103 nucleotides Dsui_1226 and Dsui_1227 are separated by 250 nucleotides Dsui_1227 and Dsui_1228 are separated by 147 nucleotides
Dsui_1225: Dsui_1225 - sporulation related protein, at 1,281,412 to 1,282,305
_1225
Dsui_1226: Dsui_1226 - hypothetical protein, at 1,282,409 to 1,282,768
_1226
Dsui_1227: Dsui_1227 - DNA/RNA helicase, superfamily I, at 1,283,019 to 1,285,226
_1227
Dsui_1228: Dsui_1228 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 1,285,374 to 1,286,645
_1228
Position (kb)
1283
1284
1285
1286 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1282.104 kb on + strand, within Dsui_1225 at 1282.435 kb on + strand at 1282.461 kb on - strand, within Dsui_1226 at 1282.533 kb on - strand, within Dsui_1226 at 1282.544 kb on + strand, within Dsui_1226 at 1282.579 kb on + strand, within Dsui_1226 at 1282.618 kb on + strand, within Dsui_1226 at 1282.777 kb on + strand at 1282.825 kb on - strand at 1282.843 kb on - strand at 1282.964 kb on + strand at 1282.969 kb on + strand at 1282.975 kb on + strand at 1282.983 kb on - strand at 1283.020 kb on + strand at 1283.054 kb on + strand at 1283.091 kb on + strand at 1283.257 kb on + strand, within Dsui_1227 at 1283.493 kb on - strand at 1283.604 kb on - strand at 1283.694 kb on + strand, within Dsui_1227 at 1283.719 kb on - strand at 1283.806 kb on + strand, within Dsui_1227 at 1283.811 kb on + strand, within Dsui_1227 at 1283.917 kb on + strand, within Dsui_1227 at 1284.142 kb on - strand, within Dsui_1227 at 1284.159 kb on + strand, within Dsui_1227 at 1284.615 kb on - strand at 1284.732 kb on + strand, within Dsui_1227 at 1284.750 kb on + strand, within Dsui_1227 at 1284.885 kb on + strand, within Dsui_1227 at 1284.987 kb on + strand, within Dsui_1227 at 1285.179 kb on + strand at 1285.239 kb on - strand at 1285.264 kb on - strand at 1285.574 kb on - strand, within Dsui_1228 at 1285.577 kb on + strand, within Dsui_1228 at 1285.596 kb on + strand, within Dsui_1228 at 1285.614 kb on + strand, within Dsui_1228 at 1285.707 kb on - strand, within Dsui_1228 at 1286.095 kb on + strand, within Dsui_1228
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 1,282,104 + Dsui_1225 0.77 -0.3 1,282,435 + -1.3 1,282,461 - Dsui_1226 0.14 -0.4 1,282,533 - Dsui_1226 0.34 -0.0 1,282,544 + Dsui_1226 0.38 -1.3 1,282,579 + Dsui_1226 0.47 -2.0 1,282,618 + Dsui_1226 0.58 -1.7 1,282,777 + +0.3 1,282,825 - -0.4 1,282,843 - -0.2 1,282,964 + +1.3 1,282,969 + -2.8 1,282,975 + -1.2 1,282,983 - +0.3 1,283,020 + -1.3 1,283,054 + -0.6 1,283,091 + +0.3 1,283,257 + Dsui_1227 0.11 -0.5 1,283,493 - +0.3 1,283,604 - +0.3 1,283,694 + Dsui_1227 0.31 -1.8 1,283,719 - +0.3 1,283,806 + Dsui_1227 0.36 -1.2 1,283,811 + Dsui_1227 0.36 -1.3 1,283,917 + Dsui_1227 0.41 -0.4 1,284,142 - Dsui_1227 0.51 -0.7 1,284,159 + Dsui_1227 0.52 -2.0 1,284,615 - -1.3 1,284,732 + Dsui_1227 0.78 -2.8 1,284,750 + Dsui_1227 0.78 -1.7 1,284,885 + Dsui_1227 0.85 -1.4 1,284,987 + Dsui_1227 0.89 -0.7 1,285,179 + -0.4 1,285,239 - +0.3 1,285,264 - -0.7 1,285,574 - Dsui_1228 0.16 -1.3 1,285,577 + Dsui_1228 0.16 -1.3 1,285,596 + Dsui_1228 0.17 -1.3 1,285,614 + Dsui_1228 0.19 -2.0 1,285,707 - Dsui_1228 0.26 -0.5 1,286,095 + Dsui_1228 0.57 +0.3
Or see this region's nucleotide sequence