Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1061 and Dsui_1062 are separated by 182 nucleotides Dsui_1062 and Dsui_1063 are separated by 441 nucleotides
Dsui_1061: Dsui_1061 - membrane-bound lytic murein transglycosylase, at 1,093,534 to 1,094,772
_1061
Dsui_1062: Dsui_1062 - ammonia permease, at 1,094,955 to 1,096,160
_1062
Dsui_1063: Dsui_1063 - hypothetical protein, at 1,096,602 to 1,097,858
_1063
Position (kb)
1094
1095
1096
1097 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1094.029 kb on + strand, within Dsui_1061 at 1094.053 kb on + strand, within Dsui_1061 at 1094.055 kb on + strand, within Dsui_1061 at 1094.063 kb on - strand, within Dsui_1061 at 1094.068 kb on - strand, within Dsui_1061 at 1094.192 kb on - strand, within Dsui_1061 at 1094.327 kb on + strand, within Dsui_1061 at 1094.427 kb on + strand, within Dsui_1061 at 1094.586 kb on - strand, within Dsui_1061 at 1094.615 kb on + strand, within Dsui_1061 at 1094.753 kb on - strand at 1094.756 kb on + strand at 1094.883 kb on - strand at 1094.896 kb on + strand at 1095.004 kb on + strand at 1095.004 kb on + strand at 1095.012 kb on - strand at 1095.040 kb on + strand at 1095.048 kb on - strand at 1095.072 kb on - strand at 1095.074 kb on + strand at 1095.074 kb on + strand at 1095.074 kb on + strand at 1095.082 kb on - strand, within Dsui_1062 at 1095.086 kb on + strand, within Dsui_1062 at 1095.104 kb on - strand, within Dsui_1062 at 1095.120 kb on - strand, within Dsui_1062 at 1095.357 kb on + strand, within Dsui_1062 at 1095.365 kb on - strand, within Dsui_1062 at 1095.480 kb on + strand, within Dsui_1062 at 1095.567 kb on - strand, within Dsui_1062 at 1095.574 kb on + strand, within Dsui_1062 at 1095.659 kb on - strand, within Dsui_1062 at 1095.667 kb on + strand, within Dsui_1062 at 1095.699 kb on + strand, within Dsui_1062 at 1095.704 kb on + strand, within Dsui_1062 at 1095.769 kb on + strand, within Dsui_1062 at 1095.849 kb on + strand, within Dsui_1062 at 1095.946 kb on - strand, within Dsui_1062 at 1095.958 kb on - strand, within Dsui_1062 at 1096.015 kb on - strand, within Dsui_1062 at 1096.040 kb on + strand at 1096.040 kb on + strand at 1096.040 kb on + strand at 1096.040 kb on + strand at 1096.043 kb on - strand at 1096.048 kb on - strand at 1096.048 kb on - strand at 1096.061 kb on + strand at 1096.061 kb on + strand at 1096.069 kb on - strand at 1096.069 kb on - strand at 1096.089 kb on + strand at 1096.089 kb on + strand at 1096.092 kb on + strand at 1096.097 kb on - strand at 1096.102 kb on - strand at 1096.126 kb on - strand at 1096.132 kb on + strand at 1096.132 kb on + strand at 1096.132 kb on + strand at 1096.142 kb on + strand at 1096.150 kb on + strand at 1096.173 kb on - strand at 1096.258 kb on + strand at 1096.267 kb on + strand at 1096.289 kb on + strand at 1096.292 kb on + strand at 1096.292 kb on + strand at 1096.321 kb on - strand at 1096.336 kb on + strand at 1096.348 kb on - strand at 1096.354 kb on - strand at 1096.363 kb on - strand at 1096.373 kb on + strand at 1096.374 kb on + strand at 1096.374 kb on + strand at 1096.374 kb on + strand at 1096.374 kb on + strand at 1096.382 kb on - strand at 1096.382 kb on - strand at 1096.382 kb on - strand at 1096.382 kb on - strand at 1096.382 kb on - strand at 1096.382 kb on - strand at 1096.383 kb on - strand at 1096.387 kb on - strand at 1096.392 kb on - strand at 1096.397 kb on + strand at 1096.397 kb on + strand at 1096.420 kb on + strand at 1096.420 kb on + strand at 1096.421 kb on + strand at 1096.427 kb on - strand at 1096.438 kb on + strand at 1096.468 kb on + strand at 1096.468 kb on + strand at 1096.476 kb on + strand at 1096.476 kb on - strand at 1096.501 kb on - strand at 1096.520 kb on + strand at 1096.528 kb on - strand at 1096.533 kb on + strand at 1096.553 kb on + strand at 1096.556 kb on - strand at 1096.558 kb on + strand at 1096.558 kb on + strand at 1096.561 kb on - strand at 1096.561 kb on - strand at 1096.569 kb on + strand at 1096.571 kb on - strand at 1096.577 kb on - strand at 1096.600 kb on + strand at 1096.600 kb on + strand at 1096.608 kb on - strand at 1096.608 kb on - strand at 1096.637 kb on - strand at 1096.662 kb on - strand at 1096.662 kb on - strand at 1096.686 kb on - strand at 1096.703 kb on + strand at 1096.724 kb on - strand at 1096.736 kb on - strand, within Dsui_1063 at 1096.789 kb on + strand, within Dsui_1063 at 1096.789 kb on + strand, within Dsui_1063 at 1096.797 kb on - strand, within Dsui_1063 at 1096.797 kb on - strand, within Dsui_1063 at 1096.818 kb on + strand, within Dsui_1063 at 1096.832 kb on - strand, within Dsui_1063 at 1096.839 kb on + strand, within Dsui_1063 at 1096.846 kb on + strand, within Dsui_1063 at 1096.857 kb on + strand, within Dsui_1063 at 1096.864 kb on - strand, within Dsui_1063 at 1096.877 kb on + strand, within Dsui_1063 at 1096.885 kb on - strand, within Dsui_1063 at 1096.906 kb on + strand, within Dsui_1063 at 1096.906 kb on + strand, within Dsui_1063 at 1096.916 kb on + strand, within Dsui_1063 at 1096.923 kb on - strand, within Dsui_1063 at 1096.934 kb on + strand, within Dsui_1063 at 1096.937 kb on - strand, within Dsui_1063 at 1096.952 kb on + strand, within Dsui_1063 at 1096.952 kb on + strand, within Dsui_1063 at 1096.960 kb on - strand, within Dsui_1063 at 1096.972 kb on + strand, within Dsui_1063 at 1096.979 kb on - strand, within Dsui_1063 at 1096.980 kb on + strand, within Dsui_1063 at 1096.982 kb on + strand, within Dsui_1063 at 1096.982 kb on + strand, within Dsui_1063 at 1096.987 kb on + strand, within Dsui_1063 at 1096.990 kb on - strand, within Dsui_1063 at 1096.990 kb on - strand, within Dsui_1063 at 1096.990 kb on - strand, within Dsui_1063 at 1096.992 kb on + strand, within Dsui_1063 at 1097.010 kb on + strand, within Dsui_1063 at 1097.095 kb on + strand, within Dsui_1063 at 1097.098 kb on - strand, within Dsui_1063 at 1097.103 kb on - strand, within Dsui_1063 at 1097.120 kb on - strand, within Dsui_1063 at 1097.124 kb on + strand at 1097.129 kb on + strand, within Dsui_1063 at 1097.145 kb on - strand, within Dsui_1063
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 1,094,029 + Dsui_1061 0.40 -0.1 1,094,053 + Dsui_1061 0.42 -0.8 1,094,055 + Dsui_1061 0.42 -0.8 1,094,063 - Dsui_1061 0.43 -0.5 1,094,068 - Dsui_1061 0.43 +0.5 1,094,192 - Dsui_1061 0.53 +0.5 1,094,327 + Dsui_1061 0.64 -0.9 1,094,427 + Dsui_1061 0.72 -0.8 1,094,586 - Dsui_1061 0.85 +0.5 1,094,615 + Dsui_1061 0.87 -0.5 1,094,753 - +1.5 1,094,756 + +0.2 1,094,883 - -0.5 1,094,896 + +0.3 1,095,004 + -0.5 1,095,004 + +0.5 1,095,012 - +0.5 1,095,040 + +1.5 1,095,048 - +0.5 1,095,072 - -2.1 1,095,074 + -0.2 1,095,074 + +0.2 1,095,074 + -2.3 1,095,082 - Dsui_1062 0.11 -0.5 1,095,086 + Dsui_1062 0.11 -1.4 1,095,104 - Dsui_1062 0.12 -2.3 1,095,120 - Dsui_1062 0.14 +0.5 1,095,357 + Dsui_1062 0.33 +0.5 1,095,365 - Dsui_1062 0.34 -0.5 1,095,480 + Dsui_1062 0.44 -1.5 1,095,567 - Dsui_1062 0.51 +0.5 1,095,574 + Dsui_1062 0.51 -1.7 1,095,659 - Dsui_1062 0.58 +0.5 1,095,667 + Dsui_1062 0.59 -1.3 1,095,699 + Dsui_1062 0.62 +1.5 1,095,704 + Dsui_1062 0.62 -0.5 1,095,769 + Dsui_1062 0.67 -1.5 1,095,849 + Dsui_1062 0.74 -0.8 1,095,946 - Dsui_1062 0.82 -1.5 1,095,958 - Dsui_1062 0.83 +0.5 1,096,015 - Dsui_1062 0.88 -1.1 1,096,040 + -1.5 1,096,040 + -0.5 1,096,040 + -0.8 1,096,040 + -1.1 1,096,043 - -2.5 1,096,048 - -1.1 1,096,048 - +0.5 1,096,061 + -1.5 1,096,061 + +1.5 1,096,069 - -0.5 1,096,069 - -1.1 1,096,089 + -1.1 1,096,089 + +0.5 1,096,092 + +0.5 1,096,097 - +0.5 1,096,102 - +0.5 1,096,126 - -2.8 1,096,132 + -1.7 1,096,132 + +0.5 1,096,132 + +0.5 1,096,142 + +0.5 1,096,150 + -1.5 1,096,173 - +0.5 1,096,258 + -2.8 1,096,267 + -1.1 1,096,289 + +0.5 1,096,292 + -1.5 1,096,292 + +0.5 1,096,321 - -2.3 1,096,336 + +0.5 1,096,348 - -0.3 1,096,354 - +0.5 1,096,363 - +0.5 1,096,373 + +0.5 1,096,374 + -1.8 1,096,374 + +0.5 1,096,374 + +0.5 1,096,374 + +0.5 1,096,382 - +1.1 1,096,382 - -0.7 1,096,382 - -1.8 1,096,382 - +0.5 1,096,382 - -2.3 1,096,382 - -2.3 1,096,383 - -0.5 1,096,387 - +0.2 1,096,392 - -1.5 1,096,397 + +0.5 1,096,397 + -1.5 1,096,420 + -1.1 1,096,420 + -2.1 1,096,421 + +0.5 1,096,427 - -1.8 1,096,438 + -2.1 1,096,468 + +0.5 1,096,468 + -1.1 1,096,476 + +0.5 1,096,476 - -0.8 1,096,501 - -0.1 1,096,520 + +0.5 1,096,528 - +0.2 1,096,533 + -0.5 1,096,553 + +0.5 1,096,556 - -0.5 1,096,558 + -0.5 1,096,558 + -0.5 1,096,561 - -1.4 1,096,561 - -0.3 1,096,569 + -1.5 1,096,571 - +0.5 1,096,577 - +0.5 1,096,600 + -0.5 1,096,600 + -0.5 1,096,608 - +2.1 1,096,608 - -0.2 1,096,637 - -0.5 1,096,662 - +2.1 1,096,662 - -3.1 1,096,686 - +0.5 1,096,703 + -1.5 1,096,724 - -2.1 1,096,736 - Dsui_1063 0.11 -1.2 1,096,789 + Dsui_1063 0.15 +2.1 1,096,789 + Dsui_1063 0.15 +1.8 1,096,797 - Dsui_1063 0.16 +0.5 1,096,797 - Dsui_1063 0.16 +1.5 1,096,818 + Dsui_1063 0.17 -1.3 1,096,832 - Dsui_1063 0.18 -0.8 1,096,839 + Dsui_1063 0.19 -1.5 1,096,846 + Dsui_1063 0.19 -1.1 1,096,857 + Dsui_1063 0.20 +0.5 1,096,864 - Dsui_1063 0.21 -0.1 1,096,877 + Dsui_1063 0.22 +0.5 1,096,885 - Dsui_1063 0.23 -3.1 1,096,906 + Dsui_1063 0.24 +0.5 1,096,906 + Dsui_1063 0.24 -0.5 1,096,916 + Dsui_1063 0.25 -2.1 1,096,923 - Dsui_1063 0.26 -0.6 1,096,934 + Dsui_1063 0.26 -1.1 1,096,937 - Dsui_1063 0.27 -0.5 1,096,952 + Dsui_1063 0.28 -1.1 1,096,952 + Dsui_1063 0.28 +0.5 1,096,960 - Dsui_1063 0.28 +1.1 1,096,972 + Dsui_1063 0.29 -1.8 1,096,979 - Dsui_1063 0.30 +0.5 1,096,980 + Dsui_1063 0.30 -1.1 1,096,982 + Dsui_1063 0.30 -0.8 1,096,982 + Dsui_1063 0.30 -1.8 1,096,987 + Dsui_1063 0.31 -1.1 1,096,990 - Dsui_1063 0.31 +0.1 1,096,990 - Dsui_1063 0.31 -1.2 1,096,990 - Dsui_1063 0.31 -0.4 1,096,992 + Dsui_1063 0.31 -1.5 1,097,010 + Dsui_1063 0.32 +0.5 1,097,095 + Dsui_1063 0.39 +0.5 1,097,098 - Dsui_1063 0.39 -0.5 1,097,103 - Dsui_1063 0.40 +0.1 1,097,120 - Dsui_1063 0.41 -0.1 1,097,124 + +0.5 1,097,129 + Dsui_1063 0.42 +1.5 1,097,145 - Dsui_1063 0.43 -0.5
Or see this region's nucleotide sequence