Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0943 and Dsui_0944 are separated by 44 nucleotides Dsui_0944 and Dsui_0945 are separated by 156 nucleotides Dsui_0945 and Dsui_0946 are separated by 10 nucleotides Dsui_0946 and Dsui_0947 are separated by 5 nucleotides
Dsui_0943: Dsui_0943 - nitrogenase cofactor biosynthesis protein NifB, at 971,700 to 973,223
_0943
Dsui_0944: Dsui_0944 - putative NADH:ubiquinone oxidoreductase, subunit RnfB, at 973,268 to 973,483
_0944
Dsui_0945: Dsui_0945 - Iron-sulfur cluster assembly accessory protein, at 973,640 to 974,056
_0945
Dsui_0946: Dsui_0946 - putative nitrogen fixation protein FixT, at 974,067 to 974,561
_0946
Dsui_0947: Dsui_0947 - hypothetical protein, at 974,567 to 975,425
_0947
Position (kb)
973
974
975 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 972.863 kb on - strand, within Dsui_0943 at 972.925 kb on + strand, within Dsui_0943 at 972.933 kb on - strand, within Dsui_0943 at 973.044 kb on + strand, within Dsui_0943 at 973.044 kb on + strand, within Dsui_0943 at 973.052 kb on - strand, within Dsui_0943 at 973.052 kb on - strand, within Dsui_0943 at 973.125 kb on + strand at 973.148 kb on + strand at 973.148 kb on + strand at 973.171 kb on + strand at 973.179 kb on - strand at 973.227 kb on - strand at 973.255 kb on - strand at 973.373 kb on + strand, within Dsui_0944 at 973.417 kb on + strand, within Dsui_0944 at 973.536 kb on + strand at 973.556 kb on - strand at 973.580 kb on - strand at 973.588 kb on + strand at 973.588 kb on + strand at 973.596 kb on + strand at 973.816 kb on + strand, within Dsui_0945 at 973.864 kb on + strand, within Dsui_0945 at 973.907 kb on - strand, within Dsui_0945 at 974.081 kb on - strand at 974.207 kb on - strand, within Dsui_0946 at 974.265 kb on + strand, within Dsui_0946 at 974.340 kb on - strand, within Dsui_0946 at 974.340 kb on - strand at 974.523 kb on - strand at 974.647 kb on + strand at 974.694 kb on - strand, within Dsui_0947 at 974.771 kb on + strand, within Dsui_0947 at 974.877 kb on + strand, within Dsui_0947 at 974.959 kb on + strand, within Dsui_0947
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 972,863 - Dsui_0943 0.76 +0.5 972,925 + Dsui_0943 0.80 -1.5 972,933 - Dsui_0943 0.81 -0.5 973,044 + Dsui_0943 0.88 +0.5 973,044 + Dsui_0943 0.88 -2.3 973,052 - Dsui_0943 0.89 -0.5 973,052 - Dsui_0943 0.89 -0.5 973,125 + +0.5 973,148 + -0.5 973,148 + -1.8 973,171 + +0.5 973,179 - -1.1 973,227 - -0.5 973,255 - -0.5 973,373 + Dsui_0944 0.49 -0.5 973,417 + Dsui_0944 0.69 +0.5 973,536 + +0.5 973,556 - -2.5 973,580 - -1.5 973,588 + -1.1 973,588 + +0.5 973,596 + -0.5 973,816 + Dsui_0945 0.42 -0.5 973,864 + Dsui_0945 0.54 -3.5 973,907 - Dsui_0945 0.64 -0.5 974,081 - -1.5 974,207 - Dsui_0946 0.28 +0.5 974,265 + Dsui_0946 0.40 -1.5 974,340 - Dsui_0946 0.55 -0.5 974,340 - +0.5 974,523 - -1.5 974,647 + -1.8 974,694 - Dsui_0947 0.15 -1.1 974,771 + Dsui_0947 0.24 +0.5 974,877 + Dsui_0947 0.36 -1.1 974,959 + Dsui_0947 0.46 -0.5
Or see this region's nucleotide sequence