Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0892 and Dsui_0893 overlap by 4 nucleotides Dsui_0893 and Dsui_0894 are separated by 0 nucleotides
Dsui_0892: Dsui_0892 - rod shape-determining protein RodA, at 906,137 to 907,237
_0892
Dsui_0893: Dsui_0893 - rare lipoprotein A, at 907,234 to 908,274
_0893
Dsui_0894: Dsui_0894 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 908,275 to 910,899
_0894
Position (kb) 907
908
909 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 907.268 kb on - strand at 907.276 kb on - strand at 907.477 kb on + strand, within Dsui_0893 at 907.505 kb on + strand, within Dsui_0893 at 907.510 kb on + strand, within Dsui_0893 at 907.542 kb on + strand, within Dsui_0893 at 907.652 kb on + strand, within Dsui_0893 at 907.665 kb on - strand at 907.988 kb on - strand, within Dsui_0893 at 908.111 kb on - strand, within Dsui_0893 at 908.111 kb on - strand, within Dsui_0893 at 908.181 kb on + strand at 908.186 kb on + strand at 908.237 kb on - strand at 908.247 kb on - strand at 908.281 kb on - strand at 908.342 kb on + strand at 908.375 kb on + strand at 908.375 kb on + strand at 908.383 kb on - strand at 908.422 kb on - strand at 908.428 kb on + strand at 908.428 kb on + strand at 908.528 kb on + strand at 908.592 kb on + strand, within Dsui_0894 at 908.649 kb on - strand, within Dsui_0894 at 908.670 kb on + strand, within Dsui_0894 at 908.761 kb on + strand, within Dsui_0894 at 908.849 kb on + strand, within Dsui_0894 at 908.910 kb on + strand, within Dsui_0894 at 908.953 kb on - strand, within Dsui_0894 at 909.014 kb on + strand, within Dsui_0894 at 909.024 kb on + strand, within Dsui_0894 at 909.031 kb on + strand, within Dsui_0894 at 909.039 kb on - strand, within Dsui_0894 at 909.097 kb on - strand, within Dsui_0894 at 909.115 kb on + strand, within Dsui_0894 at 909.115 kb on + strand, within Dsui_0894 at 909.115 kb on + strand, within Dsui_0894 at 909.152 kb on - strand, within Dsui_0894 at 909.179 kb on - strand at 909.203 kb on - strand at 909.215 kb on - strand, within Dsui_0894 at 909.237 kb on - strand, within Dsui_0894 at 909.269 kb on - strand, within Dsui_0894
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 907,268 - -1.2 907,276 - -1.1 907,477 + Dsui_0893 0.23 -0.6 907,505 + Dsui_0893 0.26 +0.9 907,510 + Dsui_0893 0.27 -0.4 907,542 + Dsui_0893 0.30 -0.6 907,652 + Dsui_0893 0.40 -0.3 907,665 - +0.5 907,988 - Dsui_0893 0.72 -1.5 908,111 - Dsui_0893 0.84 -1.5 908,111 - Dsui_0893 0.84 -0.4 908,181 + -0.1 908,186 + -0.1 908,237 - -2.1 908,247 - +0.9 908,281 - -1.8 908,342 + -0.7 908,375 + -3.1 908,375 + -0.7 908,383 - -1.8 908,422 - +0.5 908,428 + -0.8 908,428 + -1.3 908,528 + +2.5 908,592 + Dsui_0894 0.12 -2.2 908,649 - Dsui_0894 0.14 -2.1 908,670 + Dsui_0894 0.15 -0.5 908,761 + Dsui_0894 0.19 +0.5 908,849 + Dsui_0894 0.22 -0.5 908,910 + Dsui_0894 0.24 -0.5 908,953 - Dsui_0894 0.26 -1.1 909,014 + Dsui_0894 0.28 -0.5 909,024 + Dsui_0894 0.29 -1.5 909,031 + Dsui_0894 0.29 -1.5 909,039 - Dsui_0894 0.29 -0.5 909,097 - Dsui_0894 0.31 +0.5 909,115 + Dsui_0894 0.32 -1.5 909,115 + Dsui_0894 0.32 +0.5 909,115 + Dsui_0894 0.32 +0.5 909,152 - Dsui_0894 0.33 -1.5 909,179 - +0.5 909,203 - +0.5 909,215 - Dsui_0894 0.36 +0.5 909,237 - Dsui_0894 0.37 +0.5 909,269 - Dsui_0894 0.38 -1.1
Or see this region's nucleotide sequence