Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0878 and Dsui_0879 are separated by 14 nucleotides Dsui_0879 and Dsui_0880 are separated by 157 nucleotides Dsui_0880 and Dsui_0881 are separated by 21 nucleotides Dsui_0881 and Dsui_0882 are separated by 189 nucleotides
Dsui_0878: Dsui_0878 - heme/copper-type cytochrome/quinol oxidase, subunit 3, at 891,186 to 891,821
_0878
Dsui_0879: Dsui_0879 - hypothetical protein, at 891,836 to 892,144
_0879
Dsui_0880: Dsui_0880 - Bacterial regulatory protein, Fis family, at 892,302 to 892,619
_0880
Dsui_0881: Dsui_0881 - cAMP-binding protein, at 892,641 to 893,348
_0881
Dsui_0882: Dsui_0882 - nitrous oxide reductase, at 893,538 to 895,835
_0882
Position (kb) 892
893
894 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 891.653 kb on + strand, within Dsui_0878 at 891.661 kb on + strand, within Dsui_0878 at 891.662 kb on - strand, within Dsui_0878 at 891.769 kb on + strand at 891.787 kb on - strand at 891.803 kb on + strand at 891.806 kb on - strand at 891.815 kb on + strand at 891.816 kb on + strand at 891.818 kb on - strand at 891.847 kb on + strand at 891.905 kb on + strand, within Dsui_0879 at 891.913 kb on - strand at 891.923 kb on - strand at 891.988 kb on + strand, within Dsui_0879 at 892.073 kb on + strand, within Dsui_0879 at 892.145 kb on - strand at 892.260 kb on + strand at 892.265 kb on + strand at 892.273 kb on - strand at 892.278 kb on + strand at 892.278 kb on + strand at 892.328 kb on + strand at 892.330 kb on - strand at 892.336 kb on - strand at 892.341 kb on - strand, within Dsui_0880 at 892.403 kb on - strand, within Dsui_0880 at 892.467 kb on + strand, within Dsui_0880 at 892.481 kb on + strand, within Dsui_0880 at 892.497 kb on + strand, within Dsui_0880 at 892.497 kb on - strand, within Dsui_0880 at 892.523 kb on + strand at 892.575 kb on - strand, within Dsui_0880 at 892.590 kb on + strand at 892.686 kb on - strand at 892.693 kb on + strand at 892.719 kb on + strand, within Dsui_0881 at 892.743 kb on + strand, within Dsui_0881 at 892.751 kb on - strand, within Dsui_0881 at 892.758 kb on + strand, within Dsui_0881 at 892.771 kb on - strand at 892.787 kb on - strand, within Dsui_0881 at 892.821 kb on - strand, within Dsui_0881 at 892.876 kb on - strand, within Dsui_0881 at 892.900 kb on - strand, within Dsui_0881 at 892.921 kb on + strand, within Dsui_0881 at 892.929 kb on + strand, within Dsui_0881 at 893.065 kb on - strand, within Dsui_0881 at 893.147 kb on + strand, within Dsui_0881 at 893.155 kb on - strand, within Dsui_0881 at 893.171 kb on + strand, within Dsui_0881 at 893.227 kb on + strand, within Dsui_0881 at 893.252 kb on + strand, within Dsui_0881 at 893.260 kb on - strand, within Dsui_0881 at 893.284 kb on - strand at 893.291 kb on - strand at 893.323 kb on + strand at 893.331 kb on - strand at 893.342 kb on + strand at 893.343 kb on + strand at 893.350 kb on - strand at 893.351 kb on - strand at 893.351 kb on - strand at 893.395 kb on - strand at 893.486 kb on + strand at 893.526 kb on + strand at 893.580 kb on - strand at 893.645 kb on - strand at 893.694 kb on - strand at 893.724 kb on + strand at 893.854 kb on - strand, within Dsui_0882 at 893.867 kb on + strand, within Dsui_0882 at 894.074 kb on + strand at 894.074 kb on + strand, within Dsui_0882 at 894.082 kb on - strand at 894.082 kb on - strand at 894.142 kb on + strand, within Dsui_0882 at 894.150 kb on - strand, within Dsui_0882 at 894.160 kb on - strand, within Dsui_0882
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 891,653 + Dsui_0878 0.73 -0.5 891,661 + Dsui_0878 0.75 -3.9 891,662 - Dsui_0878 0.75 -1.5 891,769 + -0.5 891,787 - -0.5 891,803 + -1.1 891,806 - +0.5 891,815 + +0.5 891,816 + -0.5 891,818 - +0.5 891,847 + +0.5 891,905 + Dsui_0879 0.22 -0.5 891,913 - +0.5 891,923 - +0.5 891,988 + Dsui_0879 0.49 -1.1 892,073 + Dsui_0879 0.77 +0.5 892,145 - -1.5 892,260 + -0.5 892,265 + -2.5 892,273 - -1.5 892,278 + +0.5 892,278 + +0.5 892,328 + -0.5 892,330 - +0.5 892,336 - +0.5 892,341 - Dsui_0880 0.12 -1.9 892,403 - Dsui_0880 0.32 +0.5 892,467 + Dsui_0880 0.52 +0.5 892,481 + Dsui_0880 0.56 -0.5 892,497 + Dsui_0880 0.61 -2.7 892,497 - Dsui_0880 0.61 -2.1 892,523 + +0.5 892,575 - Dsui_0880 0.86 -0.5 892,590 + +0.5 892,686 - -1.1 892,693 + -2.1 892,719 + Dsui_0881 0.11 +0.5 892,743 + Dsui_0881 0.14 -1.1 892,751 - Dsui_0881 0.16 -0.5 892,758 + Dsui_0881 0.17 -1.9 892,771 - +0.5 892,787 - Dsui_0881 0.21 -1.9 892,821 - Dsui_0881 0.25 +0.5 892,876 - Dsui_0881 0.33 -0.5 892,900 - Dsui_0881 0.37 -1.1 892,921 + Dsui_0881 0.40 -1.9 892,929 + Dsui_0881 0.41 -0.5 893,065 - Dsui_0881 0.60 -0.5 893,147 + Dsui_0881 0.71 -1.5 893,155 - Dsui_0881 0.73 -1.9 893,171 + Dsui_0881 0.75 -1.1 893,227 + Dsui_0881 0.83 +0.5 893,252 + Dsui_0881 0.86 -1.9 893,260 - Dsui_0881 0.87 +0.5 893,284 - +0.5 893,291 - +0.5 893,323 + -0.5 893,331 - -0.5 893,342 + -1.9 893,343 + -0.5 893,350 - +0.5 893,351 - +0.5 893,351 - -1.5 893,395 - -1.1 893,486 + +0.5 893,526 + -0.5 893,580 - -0.5 893,645 - -0.5 893,694 - -2.1 893,724 + -1.1 893,854 - Dsui_0882 0.14 +0.5 893,867 + Dsui_0882 0.14 -0.5 894,074 + +0.5 894,074 + Dsui_0882 0.23 +0.5 894,082 - +0.5 894,082 - +0.5 894,142 + Dsui_0882 0.26 -0.5 894,150 - Dsui_0882 0.27 -0.5 894,160 - Dsui_0882 0.27 -1.9
Or see this region's nucleotide sequence