Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0877 and Dsui_0878 are separated by 322 nucleotides Dsui_0878 and Dsui_0879 are separated by 14 nucleotides Dsui_0879 and Dsui_0880 are separated by 157 nucleotides Dsui_0880 and Dsui_0881 are separated by 21 nucleotides
Dsui_0877: Dsui_0877 - cytochrome c oxidase accessory protein FixG, at 889,484 to 890,863
_0877
Dsui_0878: Dsui_0878 - heme/copper-type cytochrome/quinol oxidase, subunit 3, at 891,186 to 891,821
_0878
Dsui_0879: Dsui_0879 - hypothetical protein, at 891,836 to 892,144
_0879
Dsui_0880: Dsui_0880 - Bacterial regulatory protein, Fis family, at 892,302 to 892,619
_0880
Dsui_0881: Dsui_0881 - cAMP-binding protein, at 892,641 to 893,348
_0881
Position (kb) 891
892 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 890.205 kb on + strand at 890.233 kb on + strand at 890.255 kb on + strand, within Dsui_0877 at 890.255 kb on + strand at 890.256 kb on - strand at 890.261 kb on - strand, within Dsui_0877 at 890.263 kb on + strand, within Dsui_0877 at 890.263 kb on + strand, within Dsui_0877 at 890.302 kb on + strand at 890.304 kb on - strand at 890.310 kb on - strand, within Dsui_0877 at 890.310 kb on - strand, within Dsui_0877 at 890.340 kb on + strand, within Dsui_0877 at 890.349 kb on - strand, within Dsui_0877 at 890.360 kb on + strand, within Dsui_0877 at 890.368 kb on - strand, within Dsui_0877 at 890.460 kb on - strand at 890.460 kb on - strand, within Dsui_0877 at 890.466 kb on + strand, within Dsui_0877 at 890.510 kb on + strand, within Dsui_0877 at 890.510 kb on + strand, within Dsui_0877 at 890.510 kb on + strand, within Dsui_0877 at 890.510 kb on + strand, within Dsui_0877 at 890.510 kb on + strand, within Dsui_0877 at 890.510 kb on + strand, within Dsui_0877 at 890.510 kb on + strand, within Dsui_0877 at 890.510 kb on + strand at 890.510 kb on + strand, within Dsui_0877 at 890.518 kb on - strand at 890.518 kb on - strand, within Dsui_0877 at 890.518 kb on - strand, within Dsui_0877 at 890.518 kb on - strand, within Dsui_0877 at 890.518 kb on - strand, within Dsui_0877 at 890.580 kb on - strand, within Dsui_0877 at 890.643 kb on - strand, within Dsui_0877 at 890.660 kb on + strand at 890.670 kb on + strand, within Dsui_0877 at 890.739 kb on + strand at 890.746 kb on + strand at 890.754 kb on - strand at 890.754 kb on - strand at 890.754 kb on - strand at 890.763 kb on + strand at 890.858 kb on + strand at 890.858 kb on - strand at 890.903 kb on - strand at 890.954 kb on - strand at 890.985 kb on + strand at 891.001 kb on + strand at 891.002 kb on + strand at 891.008 kb on + strand at 891.008 kb on - strand at 891.009 kb on - strand at 891.054 kb on - strand at 891.067 kb on + strand at 891.099 kb on - strand at 891.119 kb on + strand at 891.144 kb on + strand at 891.144 kb on + strand at 891.162 kb on - strand at 891.184 kb on + strand at 891.223 kb on + strand at 891.223 kb on + strand at 891.228 kb on + strand at 891.233 kb on + strand at 891.233 kb on + strand at 891.241 kb on - strand at 891.244 kb on + strand at 891.250 kb on + strand, within Dsui_0878 at 891.250 kb on + strand, within Dsui_0878 at 891.250 kb on + strand at 891.250 kb on + strand, within Dsui_0878 at 891.255 kb on + strand, within Dsui_0878 at 891.322 kb on + strand, within Dsui_0878 at 891.332 kb on + strand, within Dsui_0878 at 891.332 kb on + strand, within Dsui_0878 at 891.340 kb on - strand, within Dsui_0878 at 891.377 kb on - strand at 891.388 kb on + strand, within Dsui_0878 at 891.396 kb on - strand, within Dsui_0878 at 891.396 kb on - strand, within Dsui_0878 at 891.574 kb on + strand, within Dsui_0878 at 891.582 kb on - strand at 891.588 kb on - strand, within Dsui_0878 at 891.593 kb on - strand, within Dsui_0878 at 891.624 kb on + strand, within Dsui_0878 at 891.624 kb on + strand, within Dsui_0878 at 891.624 kb on + strand, within Dsui_0878 at 891.624 kb on + strand, within Dsui_0878 at 891.628 kb on + strand, within Dsui_0878 at 891.628 kb on + strand, within Dsui_0878 at 891.632 kb on - strand, within Dsui_0878 at 891.632 kb on - strand at 891.632 kb on - strand, within Dsui_0878 at 891.653 kb on + strand, within Dsui_0878 at 891.661 kb on + strand, within Dsui_0878 at 891.662 kb on - strand, within Dsui_0878 at 891.769 kb on + strand at 891.787 kb on - strand at 891.803 kb on + strand at 891.806 kb on - strand at 891.815 kb on + strand at 891.816 kb on + strand at 891.818 kb on - strand at 891.847 kb on + strand at 891.905 kb on + strand, within Dsui_0879 at 891.913 kb on - strand at 891.923 kb on - strand at 891.988 kb on + strand, within Dsui_0879 at 892.073 kb on + strand, within Dsui_0879 at 892.145 kb on - strand at 892.260 kb on + strand at 892.265 kb on + strand at 892.273 kb on - strand at 892.278 kb on + strand at 892.278 kb on + strand at 892.328 kb on + strand at 892.330 kb on - strand at 892.336 kb on - strand at 892.341 kb on - strand, within Dsui_0880 at 892.403 kb on - strand, within Dsui_0880 at 892.467 kb on + strand, within Dsui_0880 at 892.481 kb on + strand, within Dsui_0880 at 892.497 kb on + strand, within Dsui_0880 at 892.497 kb on - strand, within Dsui_0880 at 892.523 kb on + strand at 892.575 kb on - strand, within Dsui_0880 at 892.590 kb on + strand at 892.686 kb on - strand at 892.693 kb on + strand at 892.719 kb on + strand, within Dsui_0881 at 892.743 kb on + strand, within Dsui_0881 at 892.751 kb on - strand, within Dsui_0881 at 892.758 kb on + strand, within Dsui_0881 at 892.771 kb on - strand at 892.787 kb on - strand, within Dsui_0881 at 892.821 kb on - strand, within Dsui_0881
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 890,205 + +0.5 890,233 + +0.5 890,255 + Dsui_0877 0.56 -0.5 890,255 + +0.5 890,256 - +0.5 890,261 - Dsui_0877 0.56 -1.1 890,263 + Dsui_0877 0.56 -0.8 890,263 + Dsui_0877 0.56 -0.1 890,302 + +0.5 890,304 - +0.5 890,310 - Dsui_0877 0.60 +0.5 890,310 - Dsui_0877 0.60 -2.3 890,340 + Dsui_0877 0.62 -1.1 890,349 - Dsui_0877 0.63 -0.5 890,360 + Dsui_0877 0.63 -1.5 890,368 - Dsui_0877 0.64 -1.1 890,460 - +0.5 890,460 - Dsui_0877 0.71 -1.1 890,466 + Dsui_0877 0.71 -2.1 890,510 + Dsui_0877 0.74 -0.5 890,510 + Dsui_0877 0.74 -1.5 890,510 + Dsui_0877 0.74 -2.5 890,510 + Dsui_0877 0.74 -1.1 890,510 + Dsui_0877 0.74 +0.5 890,510 + Dsui_0877 0.74 -1.1 890,510 + Dsui_0877 0.74 -0.5 890,510 + +0.5 890,510 + Dsui_0877 0.74 +0.5 890,518 - +0.5 890,518 - Dsui_0877 0.75 -0.5 890,518 - Dsui_0877 0.75 -0.5 890,518 - Dsui_0877 0.75 +0.5 890,518 - Dsui_0877 0.75 +0.5 890,580 - Dsui_0877 0.79 +0.5 890,643 - Dsui_0877 0.84 +0.5 890,660 + -0.5 890,670 + Dsui_0877 0.86 +0.5 890,739 + +0.5 890,746 + +0.5 890,754 - -0.5 890,754 - +0.5 890,754 - -1.1 890,763 + -2.5 890,858 + -0.5 890,858 - +0.5 890,903 - -0.5 890,954 - +0.5 890,985 + +0.5 891,001 + +0.5 891,002 + -0.5 891,008 + -1.5 891,008 - -0.5 891,009 - -1.5 891,054 - -0.5 891,067 + -1.1 891,099 - +0.5 891,119 + -1.1 891,144 + +0.5 891,144 + +0.5 891,162 - -0.5 891,184 + -0.5 891,223 + -1.1 891,223 + -2.1 891,228 + +0.5 891,233 + -1.1 891,233 + -2.1 891,241 - -0.5 891,244 + -1.1 891,250 + Dsui_0878 0.10 +0.5 891,250 + Dsui_0878 0.10 -1.1 891,250 + +0.5 891,250 + Dsui_0878 0.10 +0.5 891,255 + Dsui_0878 0.11 -1.1 891,322 + Dsui_0878 0.21 -1.1 891,332 + Dsui_0878 0.23 -1.5 891,332 + Dsui_0878 0.23 -0.5 891,340 - Dsui_0878 0.24 -2.3 891,377 - +0.5 891,388 + Dsui_0878 0.32 -0.5 891,396 - Dsui_0878 0.33 +0.5 891,396 - Dsui_0878 0.33 -1.1 891,574 + Dsui_0878 0.61 -2.1 891,582 - +0.5 891,588 - Dsui_0878 0.63 -2.9 891,593 - Dsui_0878 0.64 -1.5 891,624 + Dsui_0878 0.69 +0.5 891,624 + Dsui_0878 0.69 -1.1 891,624 + Dsui_0878 0.69 +0.5 891,624 + Dsui_0878 0.69 -1.9 891,628 + Dsui_0878 0.69 -2.3 891,628 + Dsui_0878 0.69 -2.9 891,632 - Dsui_0878 0.70 -0.5 891,632 - +0.5 891,632 - Dsui_0878 0.70 +0.5 891,653 + Dsui_0878 0.73 -0.5 891,661 + Dsui_0878 0.75 -3.9 891,662 - Dsui_0878 0.75 -1.5 891,769 + -0.5 891,787 - -0.5 891,803 + -1.1 891,806 - +0.5 891,815 + +0.5 891,816 + -0.5 891,818 - +0.5 891,847 + +0.5 891,905 + Dsui_0879 0.22 -0.5 891,913 - +0.5 891,923 - +0.5 891,988 + Dsui_0879 0.49 -1.1 892,073 + Dsui_0879 0.77 +0.5 892,145 - -1.5 892,260 + -0.5 892,265 + -2.5 892,273 - -1.5 892,278 + +0.5 892,278 + +0.5 892,328 + -0.5 892,330 - +0.5 892,336 - +0.5 892,341 - Dsui_0880 0.12 -1.9 892,403 - Dsui_0880 0.32 +0.5 892,467 + Dsui_0880 0.52 +0.5 892,481 + Dsui_0880 0.56 -0.5 892,497 + Dsui_0880 0.61 -2.7 892,497 - Dsui_0880 0.61 -2.1 892,523 + +0.5 892,575 - Dsui_0880 0.86 -0.5 892,590 + +0.5 892,686 - -1.1 892,693 + -2.1 892,719 + Dsui_0881 0.11 +0.5 892,743 + Dsui_0881 0.14 -1.1 892,751 - Dsui_0881 0.16 -0.5 892,758 + Dsui_0881 0.17 -1.9 892,771 - +0.5 892,787 - Dsui_0881 0.21 -1.9 892,821 - Dsui_0881 0.25 +0.5
Or see this region's nucleotide sequence