Strain Fitness in Dechlorosoma suillum PS around Dsui_0803

Experiment: ALP with Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0801 and Dsui_0802 are separated by 18 nucleotidesDsui_0802 and Dsui_0803 are separated by 117 nucleotidesDsui_0803 and Dsui_0804 are separated by 10 nucleotides Dsui_0801: Dsui_0801 - transcriptional regulator/sugar kinase, at 807,188 to 808,078 _0801 Dsui_0802: Dsui_0802 - hypothetical protein, at 808,097 to 808,798 _0802 Dsui_0803: Dsui_0803 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 808,916 to 811,168 _0803 Dsui_0804: Dsui_0804 - hypothetical protein, at 811,179 to 812,312 _0804 Position (kb) 808 809 810 811 812Strain fitness (log2 ratio) -3 -2 -1 0 1at 807.955 kb on - strandat 807.955 kb on - strand, within Dsui_0801at 807.976 kb on + strand, within Dsui_0801at 807.994 kb on - strandat 808.011 kb on + strandat 808.021 kb on + strandat 808.132 kb on + strandat 808.153 kb on - strandat 808.186 kb on - strand, within Dsui_0802at 808.214 kb on - strand, within Dsui_0802at 808.340 kb on - strand, within Dsui_0802at 808.341 kb on + strand, within Dsui_0802at 808.382 kb on - strand, within Dsui_0802at 808.393 kb on - strandat 808.393 kb on - strand, within Dsui_0802at 808.624 kb on - strand, within Dsui_0802at 808.671 kb on - strand, within Dsui_0802at 808.691 kb on - strand, within Dsui_0802at 808.776 kb on + strandat 808.879 kb on - strandat 808.891 kb on + strandat 808.923 kb on - strandat 808.940 kb on + strandat 808.946 kb on + strandat 809.005 kb on + strandat 809.012 kb on + strandat 809.020 kb on - strandat 809.030 kb on - strandat 809.134 kb on + strandat 809.161 kb on + strand, within Dsui_0803at 809.169 kb on - strandat 809.169 kb on - strand, within Dsui_0803at 809.193 kb on + strand, within Dsui_0803at 809.201 kb on - strandat 809.257 kb on + strand, within Dsui_0803at 809.295 kb on + strand, within Dsui_0803at 809.335 kb on + strand, within Dsui_0803at 809.389 kb on - strand, within Dsui_0803at 809.427 kb on + strand, within Dsui_0803at 809.469 kb on + strand, within Dsui_0803at 809.470 kb on - strand, within Dsui_0803at 809.494 kb on - strand, within Dsui_0803at 809.529 kb on - strand, within Dsui_0803at 809.529 kb on - strandat 809.529 kb on - strand, within Dsui_0803at 809.531 kb on + strand, within Dsui_0803at 809.605 kb on - strand, within Dsui_0803at 809.606 kb on - strand, within Dsui_0803at 809.621 kb on + strand, within Dsui_0803at 809.626 kb on + strand, within Dsui_0803at 809.634 kb on - strand, within Dsui_0803at 809.644 kb on + strand, within Dsui_0803at 809.685 kb on + strand, within Dsui_0803at 809.728 kb on - strand, within Dsui_0803at 809.785 kb on + strand, within Dsui_0803at 809.830 kb on + strand, within Dsui_0803at 809.923 kb on + strand, within Dsui_0803at 809.930 kb on - strand, within Dsui_0803at 809.994 kb on + strand, within Dsui_0803at 810.002 kb on - strand, within Dsui_0803at 810.047 kb on - strand, within Dsui_0803at 810.123 kb on + strand, within Dsui_0803at 810.140 kb on + strand, within Dsui_0803at 810.142 kb on - strand, within Dsui_0803at 810.162 kb on + strand, within Dsui_0803at 810.228 kb on + strand, within Dsui_0803at 810.235 kb on + strand, within Dsui_0803at 810.236 kb on - strand, within Dsui_0803at 810.305 kb on - strand, within Dsui_0803at 810.336 kb on + strand, within Dsui_0803at 810.343 kb on + strand, within Dsui_0803at 810.389 kb on + strand, within Dsui_0803at 810.422 kb on + strand, within Dsui_0803at 810.425 kb on - strandat 810.505 kb on + strand, within Dsui_0803at 810.528 kb on - strand, within Dsui_0803at 810.543 kb on + strand, within Dsui_0803at 810.578 kb on - strand, within Dsui_0803at 810.611 kb on - strand, within Dsui_0803at 810.624 kb on - strand, within Dsui_0803at 810.657 kb on + strand, within Dsui_0803at 810.675 kb on + strand, within Dsui_0803at 810.675 kb on + strand, within Dsui_0803at 810.704 kb on - strand, within Dsui_0803at 810.715 kb on - strand, within Dsui_0803at 810.740 kb on - strand, within Dsui_0803at 810.743 kb on + strand, within Dsui_0803at 810.746 kb on - strand, within Dsui_0803at 810.751 kb on - strand, within Dsui_0803at 810.751 kb on - strand, within Dsui_0803at 810.752 kb on - strand, within Dsui_0803at 810.768 kb on + strand, within Dsui_0803at 810.776 kb on - strand, within Dsui_0803at 810.776 kb on - strand, within Dsui_0803at 810.776 kb on - strand, within Dsui_0803at 810.779 kb on + strand, within Dsui_0803at 810.784 kb on + strand, within Dsui_0803at 810.848 kb on - strand, within Dsui_0803at 810.867 kb on - strand, within Dsui_0803at 810.904 kb on + strand, within Dsui_0803at 810.923 kb on + strand, within Dsui_0803at 810.961 kb on + strandat 810.991 kb on + strandat 810.998 kb on + strandat 811.057 kb on - strandat 811.059 kb on + strandat 811.059 kb on + strandat 811.069 kb on + strandat 811.083 kb on - strandat 811.170 kb on - strandat 811.171 kb on - strandat 811.184 kb on - strandat 811.196 kb on - strandat 811.218 kb on - strandat 811.225 kb on + strandat 811.243 kb on - strandat 811.265 kb on + strandat 811.350 kb on + strand, within Dsui_0804at 811.362 kb on + strand, within Dsui_0804at 811.379 kb on - strand, within Dsui_0804at 811.526 kb on + strand, within Dsui_0804at 811.589 kb on + strand, within Dsui_0804at 811.600 kb on + strand, within Dsui_0804at 811.625 kb on + strand, within Dsui_0804at 811.731 kb on + strandat 811.746 kb on - strand, within Dsui_0804at 811.815 kb on + strand, within Dsui_0804at 811.847 kb on + strand, within Dsui_0804at 811.855 kb on - strand, within Dsui_0804at 811.855 kb on - strand, within Dsui_0804at 811.880 kb on + strand, within Dsui_0804at 811.884 kb on + strand, within Dsui_0804at 811.884 kb on + strandat 811.892 kb on - strand, within Dsui_0804at 811.894 kb on - strand, within Dsui_0804at 811.902 kb on - strand, within Dsui_0804at 811.945 kb on + strand, within Dsui_0804at 811.953 kb on - strand, within Dsui_0804at 811.955 kb on + strand, within Dsui_0804at 811.963 kb on - strand, within Dsui_0804at 811.970 kb on + strand, within Dsui_0804at 811.970 kb on + strand, within Dsui_0804at 811.978 kb on - strand, within Dsui_0804at 812.012 kb on - strand, within Dsui_0804at 812.063 kb on + strand, within Dsui_0804at 812.063 kb on + strand, within Dsui_0804at 812.153 kb on + strand, within Dsui_0804

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM
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807,955 - +0.5
807,955 - Dsui_0801 0.86 -1.9
807,976 + Dsui_0801 0.88 -0.6
807,994 - +0.5
808,011 + -0.6
808,021 + -0.2
808,132 + +0.1
808,153 - +0.5
808,186 - Dsui_0802 0.13 -1.1
808,214 - Dsui_0802 0.17 -1.5
808,340 - Dsui_0802 0.35 -1.1
808,341 + Dsui_0802 0.35 -0.6
808,382 - Dsui_0802 0.41 -2.7
808,393 - -1.1
808,393 - Dsui_0802 0.42 -0.5
808,624 - Dsui_0802 0.75 -1.1
808,671 - Dsui_0802 0.82 +0.5
808,691 - Dsui_0802 0.85 -2.8
808,776 + -1.6
808,879 - +0.5
808,891 + -0.5
808,923 - -1.9
808,940 + +0.5
808,946 + -0.3
809,005 + -0.1
809,012 + +0.3
809,020 - +0.5
809,030 - -0.5
809,134 + +0.3
809,161 + Dsui_0803 0.11 -0.5
809,169 - +0.5
809,169 - Dsui_0803 0.11 -1.9
809,193 + Dsui_0803 0.12 +0.1
809,201 - +0.5
809,257 + Dsui_0803 0.15 +1.7
809,295 + Dsui_0803 0.17 -0.5
809,335 + Dsui_0803 0.19 -0.5
809,389 - Dsui_0803 0.21 -3.2
809,427 + Dsui_0803 0.23 +0.5
809,469 + Dsui_0803 0.25 -1.5
809,470 - Dsui_0803 0.25 -0.5
809,494 - Dsui_0803 0.26 +0.5
809,529 - Dsui_0803 0.27 -0.5
809,529 - +0.5
809,529 - Dsui_0803 0.27 -1.9
809,531 + Dsui_0803 0.27 -1.7
809,605 - Dsui_0803 0.31 -2.3
809,606 - Dsui_0803 0.31 +0.5
809,621 + Dsui_0803 0.31 +0.3
809,626 + Dsui_0803 0.32 +0.1
809,634 - Dsui_0803 0.32 +0.5
809,644 + Dsui_0803 0.32 -1.6
809,685 + Dsui_0803 0.34 +0.5
809,728 - Dsui_0803 0.36 +0.5
809,785 + Dsui_0803 0.39 -0.5
809,830 + Dsui_0803 0.41 +0.5
809,923 + Dsui_0803 0.45 -0.5
809,930 - Dsui_0803 0.45 +0.5
809,994 + Dsui_0803 0.48 -0.5
810,002 - Dsui_0803 0.48 -1.9
810,047 - Dsui_0803 0.50 -1.1
810,123 + Dsui_0803 0.54 -1.0
810,140 + Dsui_0803 0.54 -1.1
810,142 - Dsui_0803 0.54 -1.1
810,162 + Dsui_0803 0.55 -3.2
810,228 + Dsui_0803 0.58 -0.5
810,235 + Dsui_0803 0.59 +1.5
810,236 - Dsui_0803 0.59 +0.5
810,305 - Dsui_0803 0.62 -1.9
810,336 + Dsui_0803 0.63 -2.7
810,343 + Dsui_0803 0.63 -2.0
810,389 + Dsui_0803 0.65 -0.5
810,422 + Dsui_0803 0.67 -1.1
810,425 - -0.5
810,505 + Dsui_0803 0.71 -0.5
810,528 - Dsui_0803 0.72 -3.1
810,543 + Dsui_0803 0.72 -1.9
810,578 - Dsui_0803 0.74 +0.5
810,611 - Dsui_0803 0.75 -1.5
810,624 - Dsui_0803 0.76 -1.1
810,657 + Dsui_0803 0.77 -0.9
810,675 + Dsui_0803 0.78 +1.3
810,675 + Dsui_0803 0.78 -0.5
810,704 - Dsui_0803 0.79 -1.1
810,715 - Dsui_0803 0.80 +0.5
810,740 - Dsui_0803 0.81 +0.5
810,743 + Dsui_0803 0.81 -0.5
810,746 - Dsui_0803 0.81 -1.9
810,751 - Dsui_0803 0.81 -1.9
810,751 - Dsui_0803 0.81 -1.4
810,752 - Dsui_0803 0.81 -1.5
810,768 + Dsui_0803 0.82 -0.5
810,776 - Dsui_0803 0.83 +0.5
810,776 - Dsui_0803 0.83 -1.5
810,776 - Dsui_0803 0.83 -1.5
810,779 + Dsui_0803 0.83 -1.0
810,784 + Dsui_0803 0.83 -0.3
810,848 - Dsui_0803 0.86 +0.5
810,867 - Dsui_0803 0.87 -1.9
810,904 + Dsui_0803 0.88 -0.9
810,923 + Dsui_0803 0.89 -0.4
810,961 + +0.9
810,991 + -0.8
810,998 + -1.9
811,057 - -0.5
811,059 + -0.9
811,059 + -0.5
811,069 + -0.2
811,083 - -1.1
811,170 - -3.0
811,171 - -0.5
811,184 - -1.9
811,196 - +0.9
811,218 - -0.4
811,225 + +0.0
811,243 - -1.1
811,265 + -2.5
811,350 + Dsui_0804 0.15 +1.5
811,362 + Dsui_0804 0.16 -0.5
811,379 - Dsui_0804 0.18 -0.5
811,526 + Dsui_0804 0.31 +0.5
811,589 + Dsui_0804 0.36 +0.5
811,600 + Dsui_0804 0.37 -2.9
811,625 + Dsui_0804 0.39 -1.9
811,731 + +0.5
811,746 - Dsui_0804 0.50 -2.3
811,815 + Dsui_0804 0.56 -1.1
811,847 + Dsui_0804 0.59 -1.9
811,855 - Dsui_0804 0.60 +0.5
811,855 - Dsui_0804 0.60 -2.1
811,880 + Dsui_0804 0.62 +0.5
811,884 + Dsui_0804 0.62 -0.5
811,884 + +0.5
811,892 - Dsui_0804 0.63 +0.5
811,894 - Dsui_0804 0.63 -0.5
811,902 - Dsui_0804 0.64 -1.1
811,945 + Dsui_0804 0.68 +0.5
811,953 - Dsui_0804 0.68 +0.5
811,955 + Dsui_0804 0.68 +0.5
811,963 - Dsui_0804 0.69 -0.5
811,970 + Dsui_0804 0.70 -1.5
811,970 + Dsui_0804 0.70 -0.5
811,978 - Dsui_0804 0.70 +0.5
812,012 - Dsui_0804 0.73 +0.5
812,063 + Dsui_0804 0.78 -3.2
812,063 + Dsui_0804 0.78 -1.1
812,153 + Dsui_0804 0.86 -0.5

Or see this region's nucleotide sequence