Strain Fitness in Dechlorosoma suillum PS around Dsui_0802

Experiment: ALP with Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0801 and Dsui_0802 are separated by 18 nucleotidesDsui_0802 and Dsui_0803 are separated by 117 nucleotides Dsui_0801: Dsui_0801 - transcriptional regulator/sugar kinase, at 807,188 to 808,078 _0801 Dsui_0802: Dsui_0802 - hypothetical protein, at 808,097 to 808,798 _0802 Dsui_0803: Dsui_0803 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 808,916 to 811,168 _0803 Position (kb) 808 809Strain fitness (log2 ratio) -3 -2 -1 0 1at 807.170 kb on - strandat 807.178 kb on + strandat 807.186 kb on - strandat 807.228 kb on - strandat 807.328 kb on - strand, within Dsui_0801at 807.344 kb on + strand, within Dsui_0801at 807.460 kb on + strand, within Dsui_0801at 807.510 kb on + strand, within Dsui_0801at 807.510 kb on + strand, within Dsui_0801at 807.510 kb on + strand, within Dsui_0801at 807.582 kb on - strand, within Dsui_0801at 807.604 kb on - strand, within Dsui_0801at 807.880 kb on + strand, within Dsui_0801at 807.880 kb on + strand, within Dsui_0801at 807.888 kb on - strand, within Dsui_0801at 807.889 kb on - strandat 807.955 kb on - strandat 807.955 kb on - strand, within Dsui_0801at 807.976 kb on + strand, within Dsui_0801at 807.994 kb on - strandat 808.011 kb on + strandat 808.021 kb on + strandat 808.132 kb on + strandat 808.153 kb on - strandat 808.186 kb on - strand, within Dsui_0802at 808.214 kb on - strand, within Dsui_0802at 808.340 kb on - strand, within Dsui_0802at 808.341 kb on + strand, within Dsui_0802at 808.382 kb on - strand, within Dsui_0802at 808.393 kb on - strandat 808.393 kb on - strand, within Dsui_0802at 808.624 kb on - strand, within Dsui_0802at 808.671 kb on - strand, within Dsui_0802at 808.691 kb on - strand, within Dsui_0802at 808.776 kb on + strandat 808.879 kb on - strandat 808.891 kb on + strandat 808.923 kb on - strandat 808.940 kb on + strandat 808.946 kb on + strandat 809.005 kb on + strandat 809.012 kb on + strandat 809.020 kb on - strandat 809.030 kb on - strandat 809.134 kb on + strandat 809.161 kb on + strand, within Dsui_0803at 809.169 kb on - strandat 809.169 kb on - strand, within Dsui_0803at 809.193 kb on + strand, within Dsui_0803at 809.201 kb on - strandat 809.257 kb on + strand, within Dsui_0803at 809.295 kb on + strand, within Dsui_0803at 809.335 kb on + strand, within Dsui_0803at 809.389 kb on - strand, within Dsui_0803at 809.427 kb on + strand, within Dsui_0803at 809.469 kb on + strand, within Dsui_0803at 809.470 kb on - strand, within Dsui_0803at 809.494 kb on - strand, within Dsui_0803at 809.529 kb on - strand, within Dsui_0803at 809.529 kb on - strandat 809.529 kb on - strand, within Dsui_0803at 809.531 kb on + strand, within Dsui_0803at 809.605 kb on - strand, within Dsui_0803at 809.606 kb on - strand, within Dsui_0803at 809.621 kb on + strand, within Dsui_0803at 809.626 kb on + strand, within Dsui_0803at 809.634 kb on - strand, within Dsui_0803at 809.644 kb on + strand, within Dsui_0803at 809.685 kb on + strand, within Dsui_0803at 809.728 kb on - strand, within Dsui_0803at 809.785 kb on + strand, within Dsui_0803

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM
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807,170 - -0.5
807,178 + -0.4
807,186 - -1.9
807,228 - +0.5
807,328 - Dsui_0801 0.16 +0.5
807,344 + Dsui_0801 0.18 -0.1
807,460 + Dsui_0801 0.31 -0.3
807,510 + Dsui_0801 0.36 -0.1
807,510 + Dsui_0801 0.36 -0.2
807,510 + Dsui_0801 0.36 -0.9
807,582 - Dsui_0801 0.44 +0.5
807,604 - Dsui_0801 0.47 -1.1
807,880 + Dsui_0801 0.78 -0.4
807,880 + Dsui_0801 0.78 -0.8
807,888 - Dsui_0801 0.79 -1.9
807,889 - -0.5
807,955 - +0.5
807,955 - Dsui_0801 0.86 -1.9
807,976 + Dsui_0801 0.88 -0.6
807,994 - +0.5
808,011 + -0.6
808,021 + -0.2
808,132 + +0.1
808,153 - +0.5
808,186 - Dsui_0802 0.13 -1.1
808,214 - Dsui_0802 0.17 -1.5
808,340 - Dsui_0802 0.35 -1.1
808,341 + Dsui_0802 0.35 -0.6
808,382 - Dsui_0802 0.41 -2.7
808,393 - -1.1
808,393 - Dsui_0802 0.42 -0.5
808,624 - Dsui_0802 0.75 -1.1
808,671 - Dsui_0802 0.82 +0.5
808,691 - Dsui_0802 0.85 -2.8
808,776 + -1.6
808,879 - +0.5
808,891 + -0.5
808,923 - -1.9
808,940 + +0.5
808,946 + -0.3
809,005 + -0.1
809,012 + +0.3
809,020 - +0.5
809,030 - -0.5
809,134 + +0.3
809,161 + Dsui_0803 0.11 -0.5
809,169 - +0.5
809,169 - Dsui_0803 0.11 -1.9
809,193 + Dsui_0803 0.12 +0.1
809,201 - +0.5
809,257 + Dsui_0803 0.15 +1.7
809,295 + Dsui_0803 0.17 -0.5
809,335 + Dsui_0803 0.19 -0.5
809,389 - Dsui_0803 0.21 -3.2
809,427 + Dsui_0803 0.23 +0.5
809,469 + Dsui_0803 0.25 -1.5
809,470 - Dsui_0803 0.25 -0.5
809,494 - Dsui_0803 0.26 +0.5
809,529 - Dsui_0803 0.27 -0.5
809,529 - +0.5
809,529 - Dsui_0803 0.27 -1.9
809,531 + Dsui_0803 0.27 -1.7
809,605 - Dsui_0803 0.31 -2.3
809,606 - Dsui_0803 0.31 +0.5
809,621 + Dsui_0803 0.31 +0.3
809,626 + Dsui_0803 0.32 +0.1
809,634 - Dsui_0803 0.32 +0.5
809,644 + Dsui_0803 0.32 -1.6
809,685 + Dsui_0803 0.34 +0.5
809,728 - Dsui_0803 0.36 +0.5
809,785 + Dsui_0803 0.39 -0.5

Or see this region's nucleotide sequence