Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0786 and Dsui_0787 are separated by 10 nucleotides Dsui_0787 and Dsui_0788 overlap by 40 nucleotides Dsui_0788 and Dsui_0789 are separated by 256 nucleotides
Dsui_0786: Dsui_0786 - Fe-S oxidoreductase, at 793,233 to 794,123
_0786
Dsui_0787: Dsui_0787 - putative membrane protein, at 794,134 to 794,580
_0787
Dsui_0788: Dsui_0788 - phosphosulfolactate phosphohydrolase-like enzyme, at 794,541 to 795,278
_0788
Dsui_0789: Dsui_0789 - diguanylate cyclase (GGDEF) domain-containing protein, at 795,535 to 796,566
_0789
Position (kb)
794
795 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 793.154 kb on - strand at 793.169 kb on + strand at 793.287 kb on + strand at 793.326 kb on - strand, within Dsui_0786 at 793.351 kb on - strand, within Dsui_0786 at 793.354 kb on - strand at 793.356 kb on - strand, within Dsui_0786 at 793.427 kb on - strand, within Dsui_0786 at 793.462 kb on - strand, within Dsui_0786 at 793.476 kb on - strand, within Dsui_0786 at 793.476 kb on - strand, within Dsui_0786 at 793.502 kb on + strand, within Dsui_0786 at 793.502 kb on + strand, within Dsui_0786 at 793.561 kb on + strand, within Dsui_0786 at 793.600 kb on - strand, within Dsui_0786 at 793.607 kb on - strand at 793.659 kb on + strand, within Dsui_0786 at 793.662 kb on - strand, within Dsui_0786 at 793.704 kb on - strand, within Dsui_0786 at 793.770 kb on - strand, within Dsui_0786 at 793.948 kb on + strand, within Dsui_0786 at 794.034 kb on + strand, within Dsui_0786 at 794.047 kb on - strand at 794.086 kb on + strand at 794.108 kb on + strand at 794.118 kb on + strand at 794.167 kb on - strand at 794.268 kb on - strand, within Dsui_0787 at 794.294 kb on - strand, within Dsui_0787 at 794.411 kb on + strand, within Dsui_0787 at 794.494 kb on + strand, within Dsui_0787 at 794.505 kb on + strand, within Dsui_0787 at 794.505 kb on + strand, within Dsui_0787 at 794.505 kb on + strand, within Dsui_0787 at 794.513 kb on - strand, within Dsui_0787 at 794.513 kb on - strand, within Dsui_0787 at 794.513 kb on - strand, within Dsui_0787 at 794.575 kb on + strand at 794.657 kb on + strand, within Dsui_0788 at 794.791 kb on + strand at 794.846 kb on + strand, within Dsui_0788 at 794.864 kb on - strand, within Dsui_0788 at 794.864 kb on - strand, within Dsui_0788 at 794.909 kb on - strand, within Dsui_0788 at 794.919 kb on + strand, within Dsui_0788 at 795.040 kb on - strand, within Dsui_0788 at 795.112 kb on - strand, within Dsui_0788 at 795.232 kb on + strand at 795.232 kb on + strand at 795.541 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 793,154 - -0.2 793,169 + +0.5 793,287 + -0.0 793,326 - Dsui_0786 0.10 -0.5 793,351 - Dsui_0786 0.13 +0.5 793,354 - -0.5 793,356 - Dsui_0786 0.14 +0.5 793,427 - Dsui_0786 0.22 -0.1 793,462 - Dsui_0786 0.26 -0.5 793,476 - Dsui_0786 0.27 -0.5 793,476 - Dsui_0786 0.27 -1.3 793,502 + Dsui_0786 0.30 -0.5 793,502 + Dsui_0786 0.30 -0.3 793,561 + Dsui_0786 0.37 +0.1 793,600 - Dsui_0786 0.41 -1.1 793,607 - +0.5 793,659 + Dsui_0786 0.48 -0.1 793,662 - Dsui_0786 0.48 -0.5 793,704 - Dsui_0786 0.53 -2.1 793,770 - Dsui_0786 0.60 -1.0 793,948 + Dsui_0786 0.80 +0.2 794,034 + Dsui_0786 0.90 +0.4 794,047 - -0.1 794,086 + -0.0 794,108 + -0.1 794,118 + +0.4 794,167 - -2.0 794,268 - Dsui_0787 0.30 -1.7 794,294 - Dsui_0787 0.36 -3.6 794,411 + Dsui_0787 0.62 -2.3 794,494 + Dsui_0787 0.81 -3.1 794,505 + Dsui_0787 0.83 -1.9 794,505 + Dsui_0787 0.83 -2.5 794,505 + Dsui_0787 0.83 -2.3 794,513 - Dsui_0787 0.85 -2.2 794,513 - Dsui_0787 0.85 -1.9 794,513 - Dsui_0787 0.85 -1.9 794,575 + -0.9 794,657 + Dsui_0788 0.16 +0.5 794,791 + +0.5 794,846 + Dsui_0788 0.41 -1.3 794,864 - Dsui_0788 0.44 -0.2 794,864 - Dsui_0788 0.44 -0.1 794,909 - Dsui_0788 0.50 -0.1 794,919 + Dsui_0788 0.51 -1.1 795,040 - Dsui_0788 0.68 +0.3 795,112 - Dsui_0788 0.77 -0.0 795,232 + -1.9 795,232 + -2.0 795,541 - -0.3
Or see this region's nucleotide sequence