Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0707 and Dsui_0708 are separated by 124 nucleotides Dsui_0708 and Dsui_0709 are separated by 64 nucleotides Dsui_0709 and Dsui_0710 are separated by 54 nucleotides
Dsui_0707: Dsui_0707 - protein RecA, at 701,577 to 702,599
_0707
Dsui_0708: Dsui_0708 - PAS domain S-box, at 702,724 to 704,817
_0708
Dsui_0709: Dsui_0709 - bacterioferritin, at 704,882 to 705,361
_0709
Dsui_0710: Dsui_0710 - competence/damage-inducible protein CinA-like protein, at 705,416 to 705,931
_0710
Position (kb) 702
703
704
705 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 701.872 kb on - strand, within Dsui_0707 at 702.020 kb on + strand, within Dsui_0707 at 702.046 kb on - strand, within Dsui_0707 at 702.067 kb on + strand at 702.085 kb on - strand, within Dsui_0707 at 702.190 kb on - strand, within Dsui_0707 at 702.344 kb on + strand at 702.380 kb on - strand, within Dsui_0707 at 702.393 kb on + strand, within Dsui_0707 at 702.469 kb on - strand, within Dsui_0707 at 702.585 kb on - strand at 702.634 kb on + strand at 702.665 kb on - strand at 702.673 kb on + strand at 702.774 kb on + strand at 702.798 kb on + strand at 702.890 kb on - strand at 702.966 kb on - strand, within Dsui_0708 at 702.978 kb on - strand, within Dsui_0708 at 702.978 kb on - strand, within Dsui_0708 at 702.995 kb on + strand, within Dsui_0708 at 703.073 kb on + strand, within Dsui_0708 at 703.081 kb on - strand at 703.207 kb on - strand at 703.235 kb on + strand, within Dsui_0708 at 703.235 kb on + strand, within Dsui_0708 at 703.315 kb on + strand, within Dsui_0708 at 703.318 kb on - strand at 703.363 kb on + strand, within Dsui_0708 at 703.366 kb on - strand at 703.436 kb on - strand, within Dsui_0708 at 703.489 kb on - strand at 703.489 kb on - strand, within Dsui_0708 at 703.525 kb on + strand, within Dsui_0708 at 703.533 kb on - strand, within Dsui_0708 at 703.562 kb on + strand, within Dsui_0708 at 703.579 kb on - strand at 703.593 kb on - strand, within Dsui_0708 at 703.682 kb on + strand, within Dsui_0708 at 703.698 kb on + strand, within Dsui_0708 at 703.724 kb on - strand, within Dsui_0708 at 703.771 kb on - strand at 703.969 kb on - strand, within Dsui_0708 at 703.988 kb on - strand, within Dsui_0708 at 703.997 kb on + strand, within Dsui_0708 at 704.093 kb on + strand at 704.142 kb on - strand, within Dsui_0708 at 704.190 kb on + strand, within Dsui_0708 at 704.199 kb on - strand at 704.211 kb on + strand, within Dsui_0708 at 704.226 kb on + strand, within Dsui_0708 at 704.234 kb on - strand, within Dsui_0708 at 704.338 kb on + strand, within Dsui_0708 at 704.423 kb on - strand at 704.428 kb on - strand, within Dsui_0708 at 704.485 kb on + strand, within Dsui_0708 at 704.527 kb on - strand, within Dsui_0708 at 704.548 kb on - strand, within Dsui_0708 at 704.560 kb on - strand at 704.560 kb on - strand, within Dsui_0708 at 704.595 kb on + strand, within Dsui_0708 at 704.614 kb on - strand at 704.632 kb on - strand at 704.701 kb on - strand at 704.763 kb on - strand at 704.764 kb on - strand at 704.821 kb on + strand at 705.026 kb on - strand, within Dsui_0709 at 705.078 kb on - strand, within Dsui_0709 at 705.162 kb on + strand, within Dsui_0709 at 705.175 kb on + strand, within Dsui_0709 at 705.180 kb on + strand, within Dsui_0709 at 705.324 kb on + strand at 705.334 kb on + strand at 705.414 kb on + strand at 705.535 kb on - strand, within Dsui_0710 at 705.541 kb on - strand, within Dsui_0710 at 705.654 kb on + strand, within Dsui_0710 at 705.715 kb on - strand, within Dsui_0710 at 705.786 kb on - strand, within Dsui_0710
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 701,872 - Dsui_0707 0.29 -0.8 702,020 + Dsui_0707 0.43 +0.4 702,046 - Dsui_0707 0.46 -0.6 702,067 + -0.6 702,085 - Dsui_0707 0.50 -0.5 702,190 - Dsui_0707 0.60 -0.6 702,344 + +0.4 702,380 - Dsui_0707 0.78 -0.3 702,393 + Dsui_0707 0.80 -0.6 702,469 - Dsui_0707 0.87 -1.2 702,585 - -1.2 702,634 + +0.4 702,665 - -1.2 702,673 + +0.4 702,774 + -1.2 702,798 + +0.4 702,890 - +0.4 702,966 - Dsui_0708 0.12 +0.4 702,978 - Dsui_0708 0.12 -2.4 702,978 - Dsui_0708 0.12 -1.6 702,995 + Dsui_0708 0.13 -1.6 703,073 + Dsui_0708 0.17 +0.4 703,081 - +0.4 703,207 - -1.2 703,235 + Dsui_0708 0.24 -1.6 703,235 + Dsui_0708 0.24 -0.6 703,315 + Dsui_0708 0.28 -1.9 703,318 - +0.4 703,363 + Dsui_0708 0.31 +0.4 703,366 - +0.4 703,436 - Dsui_0708 0.34 -1.6 703,489 - +0.4 703,489 - Dsui_0708 0.37 -1.6 703,525 + Dsui_0708 0.38 -1.2 703,533 - Dsui_0708 0.39 -1.6 703,562 + Dsui_0708 0.40 -0.6 703,579 - +0.4 703,593 - Dsui_0708 0.41 -1.9 703,682 + Dsui_0708 0.46 -1.2 703,698 + Dsui_0708 0.47 -2.4 703,724 - Dsui_0708 0.48 -0.6 703,771 - +0.4 703,969 - Dsui_0708 0.59 -2.2 703,988 - Dsui_0708 0.60 -2.2 703,997 + Dsui_0708 0.61 -3.3 704,093 + +0.4 704,142 - Dsui_0708 0.68 -3.1 704,190 + Dsui_0708 0.70 -1.6 704,199 - +0.4 704,211 + Dsui_0708 0.71 -0.6 704,226 + Dsui_0708 0.72 -1.6 704,234 - Dsui_0708 0.72 +0.4 704,338 + Dsui_0708 0.77 -2.6 704,423 - +0.4 704,428 - Dsui_0708 0.81 -0.6 704,485 + Dsui_0708 0.84 -1.2 704,527 - Dsui_0708 0.86 -1.7 704,548 - Dsui_0708 0.87 -0.6 704,560 - +0.4 704,560 - Dsui_0708 0.88 -1.6 704,595 + Dsui_0708 0.89 +1.0 704,614 - -0.6 704,632 - -1.6 704,701 - -1.9 704,763 - +0.4 704,764 - -1.2 704,821 + -2.4 705,026 - Dsui_0709 0.30 -0.4 705,078 - Dsui_0709 0.41 -0.3 705,162 + Dsui_0709 0.58 -0.6 705,175 + Dsui_0709 0.61 -1.9 705,180 + Dsui_0709 0.62 -0.6 705,324 + -1.9 705,334 + +0.4 705,414 + +0.4 705,535 - Dsui_0710 0.23 -0.1 705,541 - Dsui_0710 0.24 -0.5 705,654 + Dsui_0710 0.46 +0.4 705,715 - Dsui_0710 0.58 -0.3 705,786 - Dsui_0710 0.72 -1.7
Or see this region's nucleotide sequence