Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0537 and Dsui_0538 are separated by 55 nucleotides Dsui_0538 and Dsui_0539 are separated by 9 nucleotides Dsui_0539 and Dsui_0540 overlap by 4 nucleotides Dsui_0540 and Dsui_0541 overlap by 8 nucleotides
Dsui_0537: Dsui_0537 - conserved protein of DIM6/NTAB family, at 541,897 to 542,436
_0537
Dsui_0538: Dsui_0538 - hypothetical protein, at 542,492 to 543,235
_0538
Dsui_0539: Dsui_0539 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 543,245 to 544,129
_0539
Dsui_0540: Dsui_0540 - L-threonine-O-3-phosphate decarboxylase, at 544,126 to 545,130
_0540
Dsui_0541: Dsui_0541 - cobalamin biosynthesis protein CobD, at 545,123 to 546,094
_0541
Position (kb) 543
544
545 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 542.280 kb on - strand, within Dsui_0537 at 542.334 kb on - strand, within Dsui_0537 at 542.577 kb on + strand, within Dsui_0538 at 542.672 kb on + strand, within Dsui_0538 at 542.783 kb on + strand at 542.912 kb on - strand, within Dsui_0538 at 543.092 kb on + strand, within Dsui_0538 at 543.273 kb on + strand at 543.295 kb on + strand at 543.351 kb on + strand, within Dsui_0539 at 543.375 kb on + strand, within Dsui_0539 at 543.609 kb on - strand, within Dsui_0539 at 543.609 kb on - strand, within Dsui_0539 at 543.615 kb on + strand, within Dsui_0539 at 543.615 kb on + strand, within Dsui_0539 at 543.623 kb on - strand, within Dsui_0539 at 543.750 kb on + strand at 543.786 kb on - strand, within Dsui_0539 at 543.788 kb on + strand, within Dsui_0539 at 543.830 kb on + strand, within Dsui_0539 at 543.952 kb on - strand, within Dsui_0539 at 544.214 kb on - strand at 544.329 kb on + strand, within Dsui_0540 at 544.337 kb on - strand, within Dsui_0540 at 544.352 kb on + strand at 544.484 kb on + strand, within Dsui_0540 at 544.526 kb on + strand, within Dsui_0540 at 544.556 kb on - strand, within Dsui_0540 at 544.672 kb on - strand, within Dsui_0540 at 544.937 kb on - strand, within Dsui_0540 at 544.965 kb on + strand, within Dsui_0540 at 544.965 kb on + strand at 544.973 kb on - strand, within Dsui_0540 at 545.035 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 542,280 - Dsui_0537 0.71 -0.8 542,334 - Dsui_0537 0.81 -1.9 542,577 + Dsui_0538 0.11 -0.6 542,672 + Dsui_0538 0.24 +0.4 542,783 + -0.6 542,912 - Dsui_0538 0.56 -1.0 543,092 + Dsui_0538 0.81 +0.4 543,273 + -0.6 543,295 + +0.4 543,351 + Dsui_0539 0.12 -1.2 543,375 + Dsui_0539 0.15 +0.4 543,609 - Dsui_0539 0.41 -0.2 543,609 - Dsui_0539 0.41 -1.0 543,615 + Dsui_0539 0.42 +0.4 543,615 + Dsui_0539 0.42 +0.4 543,623 - Dsui_0539 0.43 +0.3 543,750 + +0.4 543,786 - Dsui_0539 0.61 -0.3 543,788 + Dsui_0539 0.61 -0.6 543,830 + Dsui_0539 0.66 -1.2 543,952 - Dsui_0539 0.80 -0.4 544,214 - -0.6 544,329 + Dsui_0540 0.20 +0.4 544,337 - Dsui_0540 0.21 +0.4 544,352 + +0.4 544,484 + Dsui_0540 0.36 +0.4 544,526 + Dsui_0540 0.40 +0.4 544,556 - Dsui_0540 0.43 -0.3 544,672 - Dsui_0540 0.54 -3.1 544,937 - Dsui_0540 0.81 +0.4 544,965 + Dsui_0540 0.83 -1.2 544,965 + +0.4 544,973 - Dsui_0540 0.84 +0.2 545,035 - +0.3
Or see this region's nucleotide sequence