Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0529 and Dsui_0530 are separated by 23 nucleotides Dsui_0530 and Dsui_0531 overlap by 4 nucleotides Dsui_0531 and Dsui_0532 are separated by 58 nucleotides
Dsui_0529: Dsui_0529 - outer membrane cobalamin receptor protein, at 533,972 to 535,936
_0529
Dsui_0530: Dsui_0530 - ABC-type Fe3+-siderophore transport system, permease component, at 535,960 to 536,940
_0530
Dsui_0531: Dsui_0531 - ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component, at 536,937 to 537,707
_0531
Dsui_0532: Dsui_0532 - cob(I)alamin adenosyltransferase, at 537,766 to 538,368
_0532
Position (kb) 535
536
537 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 534.986 kb on - strand, within Dsui_0529 at 535.008 kb on + strand, within Dsui_0529 at 535.023 kb on + strand, within Dsui_0529 at 535.056 kb on + strand, within Dsui_0529 at 535.056 kb on + strand, within Dsui_0529 at 535.081 kb on + strand, within Dsui_0529 at 535.098 kb on + strand, within Dsui_0529 at 535.188 kb on + strand, within Dsui_0529 at 535.217 kb on - strand, within Dsui_0529 at 535.220 kb on + strand, within Dsui_0529 at 535.271 kb on + strand, within Dsui_0529 at 535.285 kb on - strand, within Dsui_0529 at 535.306 kb on - strand at 535.405 kb on - strand, within Dsui_0529 at 535.423 kb on + strand, within Dsui_0529 at 535.428 kb on + strand, within Dsui_0529 at 535.433 kb on + strand, within Dsui_0529 at 535.441 kb on - strand, within Dsui_0529 at 535.661 kb on - strand, within Dsui_0529 at 535.678 kb on + strand, within Dsui_0529 at 535.693 kb on - strand, within Dsui_0529 at 535.764 kb on + strand at 535.847 kb on - strand at 535.889 kb on - strand at 535.889 kb on - strand at 535.943 kb on + strand at 536.023 kb on - strand at 536.119 kb on + strand, within Dsui_0530 at 536.180 kb on - strand, within Dsui_0530 at 536.236 kb on - strand, within Dsui_0530 at 536.241 kb on - strand, within Dsui_0530 at 536.361 kb on + strand, within Dsui_0530 at 536.451 kb on - strand at 536.467 kb on + strand, within Dsui_0530 at 536.519 kb on - strand, within Dsui_0530 at 536.620 kb on + strand, within Dsui_0530 at 536.628 kb on - strand, within Dsui_0530 at 536.659 kb on - strand, within Dsui_0530 at 536.902 kb on + strand at 536.917 kb on + strand at 536.943 kb on + strand at 536.952 kb on - strand at 536.998 kb on - strand at 537.024 kb on + strand, within Dsui_0531 at 537.064 kb on + strand, within Dsui_0531 at 537.136 kb on + strand, within Dsui_0531 at 537.186 kb on + strand, within Dsui_0531 at 537.291 kb on + strand, within Dsui_0531 at 537.296 kb on + strand, within Dsui_0531 at 537.299 kb on - strand, within Dsui_0531 at 537.304 kb on - strand at 537.321 kb on + strand, within Dsui_0531 at 537.472 kb on + strand, within Dsui_0531 at 537.645 kb on + strand at 537.677 kb on - strand at 537.682 kb on - strand at 537.836 kb on - strand at 537.899 kb on - strand, within Dsui_0532 at 537.899 kb on - strand, within Dsui_0532 at 537.937 kb on - strand, within Dsui_0532
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 534,986 - Dsui_0529 0.52 -1.9 535,008 + Dsui_0529 0.53 -0.6 535,023 + Dsui_0529 0.53 -0.2 535,056 + Dsui_0529 0.55 -0.0 535,056 + Dsui_0529 0.55 -0.0 535,081 + Dsui_0529 0.56 -1.1 535,098 + Dsui_0529 0.57 -0.0 535,188 + Dsui_0529 0.62 -0.3 535,217 - Dsui_0529 0.63 -1.6 535,220 + Dsui_0529 0.64 -1.0 535,271 + Dsui_0529 0.66 -1.2 535,285 - Dsui_0529 0.67 -1.2 535,306 - +0.4 535,405 - Dsui_0529 0.73 +0.4 535,423 + Dsui_0529 0.74 -0.8 535,428 + Dsui_0529 0.74 +0.4 535,433 + Dsui_0529 0.74 -0.5 535,441 - Dsui_0529 0.75 -0.6 535,661 - Dsui_0529 0.86 -0.6 535,678 + Dsui_0529 0.87 -0.4 535,693 - Dsui_0529 0.88 -3.5 535,764 + -0.0 535,847 - -1.2 535,889 - +0.4 535,889 - -0.6 535,943 + -0.4 536,023 - +0.4 536,119 + Dsui_0530 0.16 -1.1 536,180 - Dsui_0530 0.22 -0.6 536,236 - Dsui_0530 0.28 -2.6 536,241 - Dsui_0530 0.29 -1.2 536,361 + Dsui_0530 0.41 -1.7 536,451 - +0.4 536,467 + Dsui_0530 0.52 -0.6 536,519 - Dsui_0530 0.57 -1.2 536,620 + Dsui_0530 0.67 -0.1 536,628 - Dsui_0530 0.68 -1.2 536,659 - Dsui_0530 0.71 -1.2 536,902 + -0.2 536,917 + -0.4 536,943 + -0.4 536,952 - +0.4 536,998 - -1.2 537,024 + Dsui_0531 0.11 -1.0 537,064 + Dsui_0531 0.16 -0.1 537,136 + Dsui_0531 0.26 -0.5 537,186 + Dsui_0531 0.32 -0.3 537,291 + Dsui_0531 0.46 -0.3 537,296 + Dsui_0531 0.47 -0.3 537,299 - Dsui_0531 0.47 -2.2 537,304 - +0.4 537,321 + Dsui_0531 0.50 +0.0 537,472 + Dsui_0531 0.69 -0.6 537,645 + -0.2 537,677 - -2.8 537,682 - -0.6 537,836 - +0.4 537,899 - Dsui_0532 0.22 -2.6 537,899 - Dsui_0532 0.22 -1.6 537,937 - Dsui_0532 0.28 +0.4
Or see this region's nucleotide sequence