Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0525 and Dsui_0527 are separated by 288 nucleotides Dsui_0527 and Dsui_0528 overlap by 4 nucleotides Dsui_0528 and Dsui_0529 are separated by 485 nucleotides
Dsui_0525: Dsui_0525 - hypothetical protein, at 532,198 to 532,668
_0525
Dsui_0527: Dsui_0527 - hypothetical protein, at 532,957 to 533,286
_0527
Dsui_0528: Dsui_0528 - hypothetical protein, at 533,283 to 533,486
_0528
Dsui_0529: Dsui_0529 - outer membrane cobalamin receptor protein, at 533,972 to 535,936
_0529
Position (kb) 533
534 Strain fitness (log2 ratio) -2
-1
0
1 at 532.298 kb on + strand, within Dsui_0525 at 532.312 kb on + strand, within Dsui_0525 at 532.371 kb on + strand, within Dsui_0525 at 532.371 kb on + strand, within Dsui_0525 at 532.429 kb on + strand, within Dsui_0525 at 532.453 kb on + strand, within Dsui_0525 at 532.646 kb on + strand at 532.658 kb on + strand at 532.678 kb on - strand at 532.686 kb on - strand at 532.736 kb on + strand at 532.844 kb on + strand at 532.978 kb on + strand at 533.028 kb on + strand, within Dsui_0527 at 533.068 kb on + strand, within Dsui_0527 at 533.068 kb on + strand, within Dsui_0527 at 533.147 kb on + strand, within Dsui_0527 at 533.152 kb on + strand, within Dsui_0527 at 533.155 kb on - strand, within Dsui_0527 at 533.307 kb on - strand, within Dsui_0528 at 533.489 kb on - strand at 533.520 kb on + strand at 533.526 kb on + strand at 533.526 kb on - strand at 533.534 kb on - strand at 533.724 kb on - strand at 533.738 kb on + strand at 533.855 kb on + strand at 533.962 kb on + strand at 533.970 kb on - strand at 533.977 kb on - strand at 534.008 kb on + strand at 534.260 kb on - strand at 534.279 kb on + strand, within Dsui_0529 at 534.336 kb on + strand, within Dsui_0529 at 534.367 kb on + strand, within Dsui_0529
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 532,298 + Dsui_0525 0.21 -0.6 532,312 + Dsui_0525 0.24 -1.2 532,371 + Dsui_0525 0.37 +0.4 532,371 + Dsui_0525 0.37 +0.4 532,429 + Dsui_0525 0.49 -1.2 532,453 + Dsui_0525 0.54 -2.4 532,646 + +0.4 532,658 + +0.4 532,678 - -0.3 532,686 - -0.2 532,736 + +0.4 532,844 + -0.6 532,978 + +0.4 533,028 + Dsui_0527 0.22 +0.4 533,068 + Dsui_0527 0.34 -1.6 533,068 + Dsui_0527 0.34 -1.2 533,147 + Dsui_0527 0.58 +0.4 533,152 + Dsui_0527 0.59 -0.6 533,155 - Dsui_0527 0.60 -0.7 533,307 - Dsui_0528 0.12 -0.1 533,489 - +0.2 533,520 + -1.2 533,526 + -1.2 533,526 - -0.6 533,534 - +0.4 533,724 - -1.6 533,738 + -0.1 533,855 + -0.6 533,962 + -0.7 533,970 - -0.6 533,977 - +0.4 534,008 + -0.4 534,260 - +0.4 534,279 + Dsui_0529 0.16 -0.5 534,336 + Dsui_0529 0.19 -0.3 534,367 + Dsui_0529 0.20 -0.5
Or see this region's nucleotide sequence