Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0173 and Dsui_0174 overlap by 4 nucleotides Dsui_0174 and Dsui_0175 overlap by 1 nucleotides Dsui_0175 and Dsui_0176 are separated by 2 nucleotides Dsui_0176 and Dsui_0177 are separated by 171 nucleotides
Dsui_0173: Dsui_0173 - site-specific DNA methylase, at 175,738 to 177,546
_0173
Dsui_0174: Dsui_0174 - hypothetical protein, at 177,543 to 178,073
_0174
Dsui_0175: Dsui_0175 - hypothetical protein, at 178,073 to 179,881
_0175
Dsui_0176: Dsui_0176 - ribosome modulation factor, at 179,884 to 180,588
_0176
Dsui_0177: Dsui_0177 - hypothetical protein, at 180,760 to 181,641
_0177
Position (kb) 178
179
180 Strain fitness (log2 ratio) -2
-1
0
1 at 177.139 kb on + strand at 177.195 kb on + strand at 177.200 kb on + strand at 177.336 kb on + strand, within Dsui_0173 at 177.443 kb on + strand at 177.534 kb on - strand at 177.649 kb on - strand at 177.705 kb on + strand at 177.766 kb on + strand, within Dsui_0174 at 177.774 kb on - strand, within Dsui_0174 at 177.787 kb on + strand, within Dsui_0174 at 177.945 kb on + strand, within Dsui_0174 at 177.995 kb on - strand at 178.228 kb on + strand at 178.265 kb on + strand, within Dsui_0175 at 178.349 kb on + strand, within Dsui_0175 at 178.354 kb on + strand, within Dsui_0175 at 178.371 kb on - strand, within Dsui_0175 at 178.847 kb on - strand at 179.097 kb on + strand, within Dsui_0175 at 179.313 kb on + strand, within Dsui_0175 at 179.358 kb on - strand at 179.510 kb on + strand, within Dsui_0175 at 179.690 kb on + strand at 179.698 kb on - strand at 179.728 kb on - strand at 179.738 kb on + strand at 179.776 kb on + strand at 179.840 kb on + strand at 179.851 kb on - strand at 179.930 kb on + strand at 180.027 kb on - strand at 180.077 kb on + strand, within Dsui_0176 at 180.195 kb on + strand, within Dsui_0176 at 180.288 kb on - strand, within Dsui_0176 at 180.365 kb on - strand at 180.403 kb on - strand, within Dsui_0176 at 180.470 kb on + strand, within Dsui_0176 at 180.470 kb on + strand at 180.478 kb on - strand at 180.478 kb on - strand, within Dsui_0176 at 180.726 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 177,139 + +0.4 177,195 + +0.4 177,200 + +0.4 177,336 + Dsui_0173 0.88 -1.2 177,443 + +0.4 177,534 - +0.4 177,649 - +0.4 177,705 + -1.2 177,766 + Dsui_0174 0.42 -1.2 177,774 - Dsui_0174 0.44 -1.9 177,787 + Dsui_0174 0.46 -1.6 177,945 + Dsui_0174 0.76 -0.2 177,995 - +0.4 178,228 + -2.2 178,265 + Dsui_0175 0.11 -1.2 178,349 + Dsui_0175 0.15 -2.2 178,354 + Dsui_0175 0.16 -1.2 178,371 - Dsui_0175 0.16 +0.4 178,847 - +0.4 179,097 + Dsui_0175 0.57 +0.4 179,313 + Dsui_0175 0.69 +0.4 179,358 - +0.4 179,510 + Dsui_0175 0.79 -1.2 179,690 + +0.4 179,698 - +0.4 179,728 - +0.4 179,738 + -1.6 179,776 + +0.4 179,840 + -1.6 179,851 - +0.4 179,930 + +0.4 180,027 - -0.6 180,077 + Dsui_0176 0.27 -0.6 180,195 + Dsui_0176 0.44 -0.6 180,288 - Dsui_0176 0.57 -1.6 180,365 - -1.2 180,403 - Dsui_0176 0.74 -0.6 180,470 + Dsui_0176 0.83 -1.6 180,470 + +0.4 180,478 - +0.4 180,478 - Dsui_0176 0.84 +0.4 180,726 - -0.6
Or see this region's nucleotide sequence