Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0093 and Dsui_0094 are separated by 122 nucleotides Dsui_0094 and Dsui_0095 are separated by 9 nucleotides Dsui_0095 and Dsui_0096 are separated by 267 nucleotides
Dsui_0093: Dsui_0093 - 5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase, at 91,636 to 92,490
_0093
Dsui_0094: Dsui_0094 - 2-oxoacid:ferredoxin oxidoreductase, gamma subunit, at 92,613 to 93,230
_0094
Dsui_0095: Dsui_0095 - indolepyruvate ferredoxin oxidreductase, alpha/beta subunit, at 93,240 to 95,105
_0095
Dsui_0096: Dsui_0096 - methyl-accepting chemotaxis protein, at 95,373 to 97,190
_0096
Position (kb) 93
94
95
96 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 92.525 kb on + strand at 92.533 kb on - strand at 92.534 kb on - strand at 92.584 kb on - strand at 92.591 kb on - strand at 92.595 kb on - strand at 92.612 kb on - strand at 92.612 kb on - strand at 92.612 kb on - strand at 92.616 kb on + strand at 92.616 kb on + strand at 92.616 kb on + strand at 92.616 kb on + strand at 92.619 kb on - strand at 92.619 kb on - strand at 92.619 kb on - strand at 92.624 kb on - strand at 92.624 kb on - strand at 92.624 kb on - strand at 92.624 kb on - strand at 92.624 kb on - strand at 92.653 kb on - strand at 92.720 kb on + strand at 92.770 kb on + strand, within Dsui_0094 at 92.777 kb on + strand, within Dsui_0094 at 92.877 kb on - strand, within Dsui_0094 at 92.908 kb on - strand at 92.908 kb on - strand, within Dsui_0094 at 92.927 kb on + strand, within Dsui_0094 at 92.935 kb on - strand, within Dsui_0094 at 92.935 kb on - strand, within Dsui_0094 at 92.935 kb on - strand, within Dsui_0094 at 92.943 kb on - strand, within Dsui_0094 at 92.994 kb on - strand, within Dsui_0094 at 93.014 kb on + strand at 93.033 kb on + strand at 93.033 kb on + strand, within Dsui_0094 at 93.041 kb on - strand, within Dsui_0094 at 93.042 kb on - strand, within Dsui_0094 at 93.050 kb on + strand, within Dsui_0094 at 93.095 kb on + strand, within Dsui_0094 at 93.127 kb on - strand, within Dsui_0094 at 93.140 kb on - strand, within Dsui_0094 at 93.291 kb on + strand at 93.386 kb on - strand at 93.432 kb on - strand, within Dsui_0095 at 93.475 kb on + strand, within Dsui_0095 at 93.484 kb on + strand, within Dsui_0095 at 93.484 kb on + strand at 93.522 kb on - strand, within Dsui_0095 at 93.544 kb on + strand at 93.553 kb on + strand at 93.553 kb on + strand at 93.561 kb on - strand, within Dsui_0095 at 93.574 kb on + strand, within Dsui_0095 at 93.582 kb on - strand, within Dsui_0095 at 93.582 kb on - strand, within Dsui_0095 at 93.610 kb on - strand, within Dsui_0095 at 93.647 kb on - strand, within Dsui_0095 at 93.704 kb on - strand, within Dsui_0095 at 93.789 kb on - strand, within Dsui_0095 at 93.792 kb on - strand, within Dsui_0095 at 93.798 kb on + strand at 93.798 kb on + strand, within Dsui_0095 at 93.798 kb on + strand, within Dsui_0095 at 93.868 kb on + strand at 93.887 kb on - strand, within Dsui_0095 at 93.906 kb on - strand, within Dsui_0095 at 93.967 kb on - strand, within Dsui_0095 at 93.967 kb on - strand, within Dsui_0095 at 94.010 kb on + strand, within Dsui_0095 at 94.018 kb on - strand, within Dsui_0095 at 94.028 kb on + strand, within Dsui_0095 at 94.051 kb on - strand, within Dsui_0095 at 94.118 kb on + strand, within Dsui_0095 at 94.152 kb on - strand, within Dsui_0095 at 94.227 kb on + strand, within Dsui_0095 at 94.292 kb on - strand, within Dsui_0095 at 94.295 kb on - strand, within Dsui_0095 at 94.323 kb on - strand, within Dsui_0095 at 94.353 kb on - strand at 94.577 kb on - strand, within Dsui_0095 at 94.618 kb on - strand, within Dsui_0095 at 94.640 kb on + strand, within Dsui_0095 at 94.648 kb on - strand, within Dsui_0095 at 94.648 kb on - strand, within Dsui_0095 at 94.670 kb on - strand, within Dsui_0095 at 94.680 kb on - strand, within Dsui_0095 at 94.753 kb on - strand, within Dsui_0095 at 94.757 kb on + strand at 94.816 kb on - strand, within Dsui_0095 at 94.939 kb on + strand at 94.939 kb on + strand at 94.939 kb on + strand at 94.939 kb on + strand at 94.939 kb on + strand at 94.939 kb on + strand at 94.939 kb on + strand at 94.939 kb on + strand at 94.946 kb on + strand at 94.946 kb on + strand at 94.946 kb on + strand at 94.947 kb on - strand at 94.947 kb on - strand at 94.947 kb on - strand at 94.947 kb on - strand at 94.947 kb on - strand at 94.947 kb on - strand at 94.947 kb on - strand at 94.947 kb on - strand at 94.954 kb on - strand at 94.954 kb on - strand at 94.954 kb on - strand at 94.954 kb on - strand at 94.954 kb on - strand at 94.954 kb on - strand at 95.014 kb on - strand at 95.020 kb on - strand at 95.073 kb on + strand at 95.073 kb on + strand at 95.073 kb on + strand at 95.078 kb on + strand at 95.081 kb on - strand at 95.081 kb on - strand at 95.081 kb on - strand at 95.153 kb on - strand at 95.198 kb on + strand at 95.200 kb on + strand at 95.219 kb on - strand at 95.255 kb on - strand at 95.289 kb on - strand at 95.353 kb on + strand at 95.357 kb on + strand at 95.383 kb on - strand at 95.390 kb on + strand at 95.456 kb on - strand at 95.485 kb on + strand at 95.490 kb on + strand at 95.498 kb on - strand at 95.500 kb on - strand at 95.522 kb on + strand at 95.530 kb on - strand at 95.571 kb on - strand, within Dsui_0096 at 95.571 kb on - strand, within Dsui_0096 at 95.571 kb on - strand at 95.571 kb on - strand, within Dsui_0096 at 95.571 kb on - strand, within Dsui_0096 at 95.592 kb on + strand, within Dsui_0096 at 95.609 kb on + strand, within Dsui_0096 at 95.623 kb on + strand, within Dsui_0096 at 95.623 kb on + strand, within Dsui_0096 at 95.623 kb on + strand, within Dsui_0096 at 95.623 kb on + strand, within Dsui_0096 at 95.655 kb on + strand, within Dsui_0096 at 95.685 kb on - strand, within Dsui_0096 at 95.707 kb on - strand, within Dsui_0096 at 95.713 kb on + strand, within Dsui_0096 at 95.741 kb on + strand, within Dsui_0096 at 95.754 kb on - strand, within Dsui_0096 at 95.762 kb on - strand, within Dsui_0096 at 96.034 kb on + strand, within Dsui_0096 at 96.054 kb on + strand, within Dsui_0096 at 96.074 kb on - strand at 96.086 kb on + strand, within Dsui_0096 at 96.094 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 92,525 + -0.6 92,533 - +0.1 92,534 - +0.2 92,584 - -0.6 92,591 - -1.6 92,595 - -0.6 92,612 - -0.6 92,612 - -2.8 92,612 - -1.2 92,616 + -0.6 92,616 + -2.6 92,616 + +0.4 92,616 + -1.9 92,619 - -1.2 92,619 - +0.4 92,619 - +0.4 92,624 - -1.2 92,624 - -2.2 92,624 - -1.9 92,624 - -1.2 92,624 - -1.2 92,653 - -1.2 92,720 + +0.4 92,770 + Dsui_0094 0.25 -0.6 92,777 + Dsui_0094 0.27 +0.4 92,877 - Dsui_0094 0.43 -0.6 92,908 - +0.4 92,908 - Dsui_0094 0.48 -0.6 92,927 + Dsui_0094 0.51 +0.4 92,935 - Dsui_0094 0.52 -2.4 92,935 - Dsui_0094 0.52 -1.2 92,935 - Dsui_0094 0.52 -1.9 92,943 - Dsui_0094 0.53 +0.4 92,994 - Dsui_0094 0.62 +2.0 93,014 + +0.4 93,033 + -1.6 93,033 + Dsui_0094 0.68 -0.6 93,041 - Dsui_0094 0.69 +0.4 93,042 - Dsui_0094 0.69 +0.4 93,050 + Dsui_0094 0.71 -2.4 93,095 + Dsui_0094 0.78 -1.2 93,127 - Dsui_0094 0.83 +0.4 93,140 - Dsui_0094 0.85 -1.9 93,291 + +0.4 93,386 - -1.2 93,432 - Dsui_0095 0.10 -0.6 93,475 + Dsui_0095 0.13 -1.9 93,484 + Dsui_0095 0.13 -0.6 93,484 + +0.4 93,522 - Dsui_0095 0.15 -1.9 93,544 + +0.4 93,553 + +0.4 93,553 + -1.6 93,561 - Dsui_0095 0.17 +0.4 93,574 + Dsui_0095 0.18 -1.2 93,582 - Dsui_0095 0.18 -1.2 93,582 - Dsui_0095 0.18 +0.4 93,610 - Dsui_0095 0.20 +0.4 93,647 - Dsui_0095 0.22 -0.6 93,704 - Dsui_0095 0.25 +0.4 93,789 - Dsui_0095 0.29 -1.9 93,792 - Dsui_0095 0.30 +0.4 93,798 + +0.4 93,798 + Dsui_0095 0.30 -0.6 93,798 + Dsui_0095 0.30 -1.2 93,868 + +0.4 93,887 - Dsui_0095 0.35 +0.4 93,906 - Dsui_0095 0.36 -1.2 93,967 - Dsui_0095 0.39 +0.4 93,967 - Dsui_0095 0.39 -1.2 94,010 + Dsui_0095 0.41 -2.4 94,018 - Dsui_0095 0.42 -2.9 94,028 + Dsui_0095 0.42 -1.2 94,051 - Dsui_0095 0.43 +0.4 94,118 + Dsui_0095 0.47 -1.2 94,152 - Dsui_0095 0.49 +0.4 94,227 + Dsui_0095 0.53 -1.2 94,292 - Dsui_0095 0.56 +0.4 94,295 - Dsui_0095 0.57 -0.6 94,323 - Dsui_0095 0.58 -0.6 94,353 - +0.4 94,577 - Dsui_0095 0.72 +0.4 94,618 - Dsui_0095 0.74 -1.9 94,640 + Dsui_0095 0.75 -1.9 94,648 - Dsui_0095 0.75 -1.9 94,648 - Dsui_0095 0.75 -1.6 94,670 - Dsui_0095 0.77 +0.4 94,680 - Dsui_0095 0.77 -0.6 94,753 - Dsui_0095 0.81 +0.4 94,757 + +0.4 94,816 - Dsui_0095 0.84 -0.6 94,939 + -0.2 94,939 + -1.9 94,939 + -0.1 94,939 + -0.8 94,939 + -1.4 94,939 + -0.6 94,939 + -2.4 94,939 + -0.4 94,946 + -0.6 94,946 + -1.9 94,946 + -0.8 94,947 - -0.6 94,947 - -1.6 94,947 - -1.2 94,947 - -1.2 94,947 - -2.2 94,947 - +0.4 94,947 - +0.4 94,947 - +0.4 94,954 - +0.4 94,954 - +0.4 94,954 - -1.2 94,954 - -1.6 94,954 - -0.6 94,954 - -1.2 95,014 - +0.4 95,020 - -0.6 95,073 + +1.0 95,073 + -0.4 95,073 + -0.6 95,078 + +0.2 95,081 - +0.4 95,081 - +0.4 95,081 - +0.4 95,153 - +0.4 95,198 + -2.4 95,200 + -0.3 95,219 - -0.6 95,255 - +0.4 95,289 - -1.2 95,353 + -0.0 95,357 + -0.3 95,383 - +0.4 95,390 + -0.2 95,456 - +0.4 95,485 + -0.1 95,490 + -0.3 95,498 - +0.4 95,500 - +0.4 95,522 + -0.5 95,530 - +0.4 95,571 - Dsui_0096 0.11 -0.6 95,571 - Dsui_0096 0.11 -1.6 95,571 - -0.6 95,571 - Dsui_0096 0.11 -1.6 95,571 - Dsui_0096 0.11 -0.6 95,592 + Dsui_0096 0.12 -0.2 95,609 + Dsui_0096 0.13 -0.5 95,623 + Dsui_0096 0.14 -0.5 95,623 + Dsui_0096 0.14 -0.5 95,623 + Dsui_0096 0.14 -0.7 95,623 + Dsui_0096 0.14 -0.3 95,655 + Dsui_0096 0.16 -0.5 95,685 - Dsui_0096 0.17 -2.8 95,707 - Dsui_0096 0.18 -1.2 95,713 + Dsui_0096 0.19 -0.4 95,741 + Dsui_0096 0.20 +0.0 95,754 - Dsui_0096 0.21 -1.2 95,762 - Dsui_0096 0.21 +0.4 96,034 + Dsui_0096 0.36 -0.4 96,054 + Dsui_0096 0.37 -0.1 96,074 - +0.4 96,086 + Dsui_0096 0.39 -0.0 96,094 - +0.4
Or see this region's nucleotide sequence